Variant report

Variant	rs4775793
Chromosome Location	chr15:49288160-49288161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49287770..49290025-chr15:49461376..49464212,2	K562	blood:
2	chr15:49287788..49289553-chr15:49304281..49306822,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11070677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070679	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11070681	0.86[CEU][hapmap]
rs11635777	0.91[ASW][hapmap];0.95[CEU][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441272	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442006	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12904439	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2305195	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34825252	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35212550	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4354871	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4390538	0.82[TSI][hapmap]
rs4775791	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4775797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168694	0.86[ASN][1000 genomes]
rs7177541	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8026097	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8033060	0.82[TSI][hapmap]
rs9920868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4775793	CATSPER2P1	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49279400-49288800	Strong transcription	HSMM	muscle
4	chr15:49280000-49289000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
6	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:49280200-49289200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
10	chr15:49280600-49291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:49281200-49292800	Strong transcription	NHLF	lung
12	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr15:49281800-49293000	Strong transcription	Liver	Liver
17	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
23	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:49282400-49288600	Weak transcription	Psoas Muscle	Psoas
25	chr15:49282400-49289200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
27	chr15:49282600-49292200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
34	chr15:49282800-49333400	Weak transcription	A549	lung
35	chr15:49283000-49288600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:49283200-49293000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:49283200-49293200	Strong transcription	Fetal Lung	lung
38	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr15:49283400-49289400	Strong transcription	Fetal Muscle Trunk	muscle
40	chr15:49283400-49289400	Strong transcription	Lung	lung
41	chr15:49283400-49290000	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:49283400-49290000	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:49283400-49292800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr15:49283400-49293000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr15:49283400-49293200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:49283400-49293400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:49283600-49293200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr15:49283800-49293400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr15:49284200-49292400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links