Variant report

Variant	rs7177541
Chromosome Location	chr15:49342630-49342631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:49342629-49342679	LNCaP	prostate:	n/a
2	chr15:49342629-49342679	ProgFib	skin:	n/a
3	chr15:49342629-49342679	HRCEpiC	kidney:	n/a
4	chr15:49342629-49342679	BE2_C	brain:	n/a
5	chr15:49342629-49342679	AG10803	skin:	n/a
6	chr15:49342629-49342679	U87	brain:	n/a
7	chr15:49342629-49342679	SK-N-SH	brain:	n/a
8	chr15:49342629-49342679	IMR90	lung:	fetal
9	chr15:49342629-49342679	BJ	skin:	n/a
10	chr15:49342629-49342679	NH-A	brain:	n/a
11	chr15:49342629-49342679	HNPCEpiC	eye:	n/a
12	chr15:49342629-49342679	AG09319	gingival:	n/a
13	chr15:49342629-49342679	HPAEpiC	pulmonary alveolar:	n/a
14	chr15:49342629-49342679	PANC-1	pancreas:	n/a
15	chr15:49342629-49342679	GM19239	blood:	n/a
16	chr15:49342629-49342679	SKMC	muscle:	n/a
17	chr15:49342629-49342679	AG09309	skin:	n/a
18	chr15:49342629-49342679	ECC-1	luminal epithelium:	n/a
19	chr15:49342629-49342679	AG04450	lung:	fetal
20	chr15:49342629-49342679	ovcar-3	ovarian:	n/a
21	chr15:49342629-49342679	HUVEC	blood vessel:	n/a
22	chr15:49342629-49342679	HCPEpiC	choroid plexus:	n/a
23	chr15:49342629-49342679	HMEC	breast:	n/a
24	chr15:49342629-49342679	AoSMC	blood vessel:	n/a
25	chr15:49342629-49342679	HRPEpiC	eye:	n/a
26	chr15:49342629-49342679	NB4	blood:	n/a
27	chr15:49342629-49342679	GM06990	blood:	n/a
28	chr15:49342629-49342679	Caco-2	colon:	n/a
29	chr15:49342629-49342679	GM12891	blood:	n/a
30	chr15:49342629-49342679	HEEpiC	esophagus:	n/a
31	chr15:49342629-49342679	SAEC	small airway:	n/a
32	chr15:49342629-49342679	Hepatocyte	liver:	n/a
33	chr15:49342629-49342679	RPTEC	kidney:	n/a
34	chr15:49342629-49342679	MCF-7	breast:	n/a
35	chr15:49342629-49342679	PFSK-1	brain:	n/a
36	chr15:49342629-49342679	NT2-D1	testis:	n/a
37	chr15:49342629-49342679	NHBE	bronchial:	n/a
38	chr15:49342629-49342679	SK-N-MC	brain:	n/a
39	chr15:49342629-49342679	MCF10A-Er-Src	breast:	n/a
40	chr15:49342629-49342679	HCT-116	colon:	n/a
41	chr15:49342629-49342679	HCM	heart:	n/a
42	chr15:49342629-49342679	HAEpiC	amniotic membrane:	n/a
43	chr15:49342629-49342679	GM12892	blood:	n/a
44	chr15:49342629-49342679	K562	blood:	n/a
45	chr15:49342629-49342679	HCF	heart:	n/a
46	chr15:49342629-49342679	A549	lung:	n/a
47	chr15:49342629-49342679	HEK293	kidney:	embryo
48	chr15:49342629-49342679	T-47D	breast:	n/a
49	chr15:49342629-49342679	HRE	kidney:	n/a
50	chr15:49342629-49342679	HL-60	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49337187..49339180-chr15:49342164..49344158,2	K562	blood:
2	chr15:49342450..49343950-chr15:49346306..49349055,2	K562	blood:

No data

Variant related genes	Relation type
SECISBP2L	CpG island
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11070677	1.00[CEU][hapmap];0.87[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11070679	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11070681	0.86[CEU][hapmap]
rs11635777	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12441272	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442006	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904439	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12915955	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12916364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305195	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34825252	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35212550	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4354871	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4480739	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4775791	0.81[AMR][1000 genomes]
rs4775793	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775797	0.88[ASW][hapmap];1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs725815	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8026097	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8029751	0.85[GIH][hapmap]
rs935001	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs935002	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs935004	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9920868	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7177541	CATSPER2P1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49339600-49343600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:49342600-49343600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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