Variant report

Variant	rs11070681
Chromosome Location	chr15:49358517-49358518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49170319..49173081-chr15:49357557..49360503,2	K562	blood:

Variant related genes	Relation type
ENSG00000255302	Chromatin interaction
ENSG00000235883	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10519208	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11070677	0.86[CEU][hapmap]
rs11070679	0.86[CEU][hapmap]
rs11632520	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11632976	0.91[ASN][1000 genomes]
rs11635777	0.83[ASW][hapmap];0.82[CEU][hapmap];0.86[GIH][hapmap];0.83[YRI][hapmap]
rs11637601	0.91[ASN][1000 genomes]
rs12101442	0.91[ASN][1000 genomes]
rs12101599	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[LWK][hapmap];0.83[MEX][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12438357	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12439497	0.80[EUR][1000 genomes]
rs12440534	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs12442006	0.86[CEU][hapmap];0.80[TSI][hapmap]
rs12898709	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12915955	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12916364	0.86[CEU][hapmap]
rs12917024	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2246995	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2305195	0.86[CEU][hapmap]
rs2413930	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28505357	0.93[ASN][1000 genomes]
rs28575845	0.93[ASN][1000 genomes]
rs28790333	0.91[ASN][1000 genomes]
rs3098614	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs3105865	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs4468544	0.87[ASN][1000 genomes]
rs4480739	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4775793	0.86[CEU][hapmap]
rs4775797	0.86[CEU][hapmap]
rs4775803	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs485182	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs520949	0.86[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs586758	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap]
rs641077	0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs7177541	0.86[CEU][hapmap]
rs725815	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7497114	0.87[ASN][1000 genomes]
rs935001	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs935002	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs935004	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9920070	0.92[ASN][1000 genomes]
rs9944174	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351400-49358800	Enhancers	Placenta	Placenta
2	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:49354000-49358600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:49355800-49361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:49357200-49358800	Weak transcription	Hela-S3	cervix
6	chr15:49357400-49361200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr15:49358000-49358600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:49358200-49358800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:49358200-49359400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr15:49358400-49358600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:49358400-49358800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:49358400-49359000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:49358400-49359000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:49358400-49359200	Enhancers	HUES48 Cell Line	embryonic stem cell

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