Variant report

Variant	rs12898709
Chromosome Location	chr15:49377191-49377192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49376062..49378863-chr15:49460544..49462985,2	K562	blood:
2	chr15:49370775..49373012-chr15:49376032..49378415,2	K562	blood:
3	chr15:49169547..49171299-chr15:49375686..49377203,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000185634	Chromatin interaction
ENSG00000235883	Chromatin interaction
ENSG00000264210	Chromatin interaction
ENSG00000255302	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10519208	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11070682	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs11070683	0.80[EUR][1000 genomes]
rs11632520	0.92[ASN][1000 genomes]
rs11632976	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637601	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637991	0.87[AFR][1000 genomes]
rs12101442	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101599	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12438357	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440534	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs12442679	0.88[AFR][1000 genomes]
rs12904344	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs12917024	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962243	0.82[JPT][hapmap]
rs1904317	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2413930	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413931	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28505357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28676698	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28790333	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2899427	0.96[YRI][hapmap];0.94[AFR][1000 genomes]
rs3098614	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3105865	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4468544	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775803	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs485182	1.00[JPT][hapmap]
rs520949	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs568994	0.84[ASN][1000 genomes]
rs586758	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs62013266	0.90[AFR][1000 genomes]
rs641077	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7497114	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032650	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs9920070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944174	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49375800-49377200	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr15:49375800-49377800	Enhancers	Brain Substantia Nigra	brain
5	chr15:49375800-49378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49376000-49377600	Weak transcription	Brain Angular Gyrus	brain
7	chr15:49376200-49377400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:49376200-49378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:49376400-49377200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:49376400-49377200	Weak transcription	Brain Hippocampus Middle	brain
12	chr15:49376400-49377400	Enhancers	NHDF-Ad	bronchial
13	chr15:49376400-49378000	Weak transcription	Fetal Lung	lung
14	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:49376600-49397600	Weak transcription	NHLF	lung
17	chr15:49376800-49377800	Weak transcription	Placenta	Placenta
18	chr15:49376800-49378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links