Variant report

Variant	rs12438175
Chromosome Location	chr15:49386457-49386458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49384437..49387309-chr15:49388507..49390532,2	K562	blood:
2	chr15:49381528..49383469-chr15:49384879..49386598,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10519208	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11070681	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11070682	0.81[CEU][hapmap]
rs11070683	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11632976	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11633810	0.82[YRI][hapmap]
rs11637601	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12101442	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12101599	0.87[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs12148348	0.92[AFR][1000 genomes]
rs12438357	0.82[EUR][1000 genomes]
rs12438777	0.84[YRI][hapmap]
rs12440534	0.90[JPT][hapmap]
rs12898709	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12917024	0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs16962057	0.94[AFR][1000 genomes]
rs1904317	0.91[JPT][hapmap]
rs2246995	0.87[JPT][hapmap]
rs2247517	0.81[YRI][hapmap]
rs2413930	0.82[EUR][1000 genomes]
rs28505357	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28575845	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28790333	0.84[EUR][1000 genomes]
rs2899427	0.81[CEU][hapmap]
rs2899431	0.81[YRI][hapmap]
rs3098613	0.82[YRI][hapmap]
rs3098614	0.91[JPT][hapmap]
rs3098621	0.81[YRI][hapmap]
rs3105858	0.84[YRI][hapmap]
rs3105864	0.82[YRI][hapmap]
rs3105865	0.91[JPT][hapmap]
rs3105866	0.84[YRI][hapmap]
rs4468544	0.81[AMR][1000 genomes]
rs4775803	0.91[JPT][hapmap]
rs481466	0.82[YRI][hapmap]
rs485182	0.95[JPT][hapmap]
rs489813	0.84[YRI][hapmap]
rs520949	0.86[JPT][hapmap]
rs586758	0.91[JPT][hapmap]
rs604765	0.84[YRI][hapmap]
rs612803	0.80[YRI][hapmap]
rs626295	0.82[YRI][hapmap]
rs641077	0.91[JPT][hapmap]
rs6493356	0.81[YRI][hapmap]
rs6493357	0.82[YRI][hapmap]
rs7162602	0.86[AFR][1000 genomes]
rs7166847	0.81[YRI][hapmap]
rs7179301	0.95[AFR][1000 genomes]
rs7497114	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8032650	0.91[JPT][hapmap]
rs9920070	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49376600-49397600	Weak transcription	NHLF	lung
5	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:49381800-49392400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:49381800-49395600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:49382400-49393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:49382600-49402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:49383400-49392800	Weak transcription	NH-A	brain
14	chr15:49384000-49392400	Weak transcription	HSMM	muscle
15	chr15:49385200-49386800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:49385600-49386800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:49385600-49403200	Weak transcription	Placenta	Placenta
18	chr15:49385800-49387000	Enhancers	Brain Substantia Nigra	brain
19	chr15:49386000-49387400	Enhancers	Brain Cingulate Gyrus	brain
20	chr15:49386000-49387400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr15:49386400-49388400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:49386400-49395200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:49386400-49403400	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:49386400-49404200	Weak transcription	Brain Inferior Temporal Lobe	brain

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