Variant report

Variant	rs12917024
Chromosome Location	chr15:49377226-49377227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49376062..49378863-chr15:49460544..49462985,2	K562	blood:
2	chr15:49370775..49373012-chr15:49376032..49378415,2	K562	blood:

Variant related genes	Relation type
ENSG00000264210	Chromatin interaction
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519208	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11632520	0.92[ASN][1000 genomes]
rs11632976	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637601	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101442	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101599	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.82[EUR][1000 genomes]
rs12438357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440534	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12898709	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962243	0.82[JPT][hapmap]
rs1904317	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.85[CHB][hapmap];0.96[JPT][hapmap];0.86[ASN][1000 genomes]
rs2413930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505357	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575845	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790333	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3098614	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3105865	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4468544	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775803	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs485182	0.84[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs520949	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs568994	0.84[ASN][1000 genomes]
rs586758	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs641077	0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7497114	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032650	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9920070	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944174	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49375800-49377800	Enhancers	Brain Substantia Nigra	brain
4	chr15:49375800-49378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:49376000-49377600	Weak transcription	Brain Angular Gyrus	brain
6	chr15:49376200-49377400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:49376200-49378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:49376400-49377400	Enhancers	NHDF-Ad	bronchial
10	chr15:49376400-49378000	Weak transcription	Fetal Lung	lung
11	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:49376600-49397600	Weak transcription	NHLF	lung
14	chr15:49376800-49377800	Weak transcription	Placenta	Placenta
15	chr15:49376800-49378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:49377200-49377400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
17	chr15:49377200-49377600	Enhancers	Brain Cingulate Gyrus	brain
18	chr15:49377200-49378400	Active TSS	Brain Hippocampus Middle	brain

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