Variant report

Variant	rs9920070
Chromosome Location	chr15:49374235-49374236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10519208	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11070681	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11070682	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs11070683	0.80[EUR][1000 genomes]
rs11632520	0.91[ASN][1000 genomes]
rs11632976	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637601	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637991	0.87[AFR][1000 genomes]
rs12101442	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12101599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12438357	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440534	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12442679	0.88[AFR][1000 genomes]
rs12898709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12904344	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs12917024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962243	0.86[JPT][hapmap]
rs1904317	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.85[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2413930	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2413931	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28505357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28575845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28676698	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28790333	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2899427	0.92[YRI][hapmap];0.94[AFR][1000 genomes]
rs3098614	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3105865	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4468544	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4775803	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs485182	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs520949	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs568994	0.83[ASN][1000 genomes]
rs586758	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs62013266	0.90[AFR][1000 genomes]
rs641077	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7497114	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8032650	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9944174	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49368600-49374800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:49371800-49375200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:49373200-49374400	Weak transcription	Placenta	Placenta
6	chr15:49374200-49375400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:49374200-49376000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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