Variant report

Variant	rs12904344
Chromosome Location	chr15:49357368-49357369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49337209..49339987-chr15:49355667..49357996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10431775	0.85[ASN][1000 genomes]
rs1048975	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs10775139	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs11070682	0.90[CHB][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11638215	0.85[CHB][hapmap]
rs11639379	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11858114	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs11858917	0.81[ASN][1000 genomes]
rs12442679	0.81[AFR][1000 genomes]
rs12898709	0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs12916287	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16962017	0.88[CEU][hapmap]
rs2413928	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2413931	0.88[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2413935	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2457228	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2580926	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2663088	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2663089	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs28505357	0.84[AFR][1000 genomes]
rs28575845	0.84[AFR][1000 genomes]
rs28676698	0.88[AFR][1000 genomes]
rs28724568	0.85[ASN][1000 genomes]
rs2899427	0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2899430	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs3098620	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs3105861	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4390538	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs4536401	0.86[CHB][hapmap]
rs489813	0.80[CHB][hapmap]
rs568726	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs600863	0.86[CHB][hapmap]
rs62013266	0.82[AFR][1000 genomes]
rs626855	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs647118	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6493346	0.85[CHB][hapmap]
rs679957	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs685172	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs7165264	0.86[CHB][hapmap]
rs7166261	0.81[ASN][1000 genomes]
rs8029751	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs8033060	0.87[CEU][hapmap];0.80[JPT][hapmap]
rs877007	0.86[CHB][hapmap]
rs935003	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9920070	0.84[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351400-49358800	Enhancers	Placenta	Placenta
2	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:49353200-49357400	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr15:49354000-49358600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:49355200-49357400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:49355400-49357600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:49355600-49357400	Enhancers	Primary T cells from cord blood	blood
8	chr15:49355600-49357400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:49355600-49357400	Enhancers	K562	blood
10	chr15:49355800-49357400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:49355800-49357400	Enhancers	Fetal Heart	heart
12	chr15:49355800-49361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:49356000-49357400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:49356000-49358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:49356000-49358400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:49356200-49357400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:49356200-49358400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:49356600-49358000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:49356800-49357400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:49356800-49358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:49357000-49357400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:49357200-49357400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:49357200-49358800	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links