Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49171581..49173495-chr15:49359003..49360715,2	K562	blood:
2	chr15:49170319..49173081-chr15:49357557..49360503,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SECISBP2L-1	chr15:49360161-49360520	ucscGeneNc_uc001zzl_1

Variant related genes	Relation type
ENSG00000255302	Chromatin interaction
ENSG00000235883	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10431775	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1048975	0.81[ASN][1000 genomes]
rs10775139	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11070682	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637991	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12148348	0.83[EUR][1000 genomes]
rs12440709	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12442679	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898691	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12902875	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12904344	0.85[ASN][1000 genomes]
rs16962057	0.83[EUR][1000 genomes]
rs2413928	0.87[EUR][1000 genomes]
rs2413931	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28676698	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2899427	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2940745	0.81[ASN][1000 genomes]
rs600863	0.81[ASN][1000 genomes]
rs62013266	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7162602	0.80[EUR][1000 genomes]
rs7179301	0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28724568	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49355800-49361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:49357400-49361200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr15:49359000-49361400	Weak transcription	Hela-S3	cervix

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