Variant report

Variant	rs28676698
Chromosome Location	chr15:49372946-49372947
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49370775..49373012-chr15:49376032..49378415,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10431775	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1048975	0.85[ASN][1000 genomes]
rs10775139	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070682	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11070683	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11637991	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12148348	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12440709	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12442679	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12898691	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12898709	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12902875	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12904344	0.88[AFR][1000 genomes]
rs16962057	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2413928	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2413931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663090	0.84[ASN][1000 genomes]
rs28505357	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28575845	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28724568	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2899427	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2940745	0.86[ASN][1000 genomes]
rs490621	0.83[ASN][1000 genomes]
rs600863	0.85[ASN][1000 genomes]
rs62013266	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679957	0.81[ASN][1000 genomes]
rs7162602	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7179301	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9920070	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28676698	GALK2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49368600-49374800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:49371800-49373200	Enhancers	Placenta	Placenta
4	chr15:49371800-49375200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:49372400-49374200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links