Variant report

Variant	rs28505357
Chromosome Location	chr15:49381693-49381694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49381528..49383469-chr15:49384879..49386598,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10519208	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	0.93[ASN][1000 genomes]
rs11070682	0.94[AFR][1000 genomes]
rs11070683	0.81[EUR][1000 genomes]
rs11632520	0.92[ASN][1000 genomes]
rs11632976	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637601	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637991	0.87[AFR][1000 genomes]
rs12101442	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101599	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12438357	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442679	0.88[AFR][1000 genomes]
rs12898709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12904344	0.84[AFR][1000 genomes]
rs12917024	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.86[ASN][1000 genomes]
rs2413930	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413931	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28575845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28676698	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs28790333	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2899427	0.94[AFR][1000 genomes]
rs4468544	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs568994	0.84[ASN][1000 genomes]
rs62013266	0.90[AFR][1000 genomes]
rs7497114	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9920070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944174	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49376600-49397600	Weak transcription	NHLF	lung
5	chr15:49378400-49385000	Weak transcription	Placenta	Placenta
6	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:49380400-49381800	Enhancers	Brain Substantia Nigra	brain
8	chr15:49380400-49382200	Enhancers	Brain Anterior Caudate	brain
9	chr15:49380400-49382400	Enhancers	Brain Cingulate Gyrus	brain
10	chr15:49380600-49382400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:49381000-49382600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:49381200-49381800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:49381600-49385200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:49381600-49386000	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:49381600-49386000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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