Variant report

Variant	rs7497114
Chromosome Location	chr15:49409936-49409937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49409539..49411389-chr15:49441274..49443184,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10519208	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11070681	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.87[ASN][1000 genomes]
rs11632520	0.86[ASN][1000 genomes]
rs11632976	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11635777	0.91[ASW][hapmap]
rs11636671	0.80[AFR][1000 genomes]
rs11637601	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12101442	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12101599	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12438175	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12438357	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440534	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs12898709	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12917024	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16962243	0.83[JPT][hapmap]
rs1904317	0.82[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap]
rs2243899	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2246995	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2413930	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2413936	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2413942	0.80[AFR][1000 genomes]
rs28505357	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28575845	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28790333	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3098614	0.83[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs3105861	0.80[YRI][hapmap]
rs3105865	0.83[ASW][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4468544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775793	0.83[ASW][hapmap]
rs4775803	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs485182	0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs520949	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.83[YRI][hapmap]
rs532209	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs568994	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs586758	0.83[ASW][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap]
rs641077	0.83[ASW][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap]
rs6493364	0.80[AFR][1000 genomes]
rs8032650	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap]
rs8041781	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9920070	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9944174	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7497114	DTWD1	cis	cerebellum	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49388800-49418800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:49388800-49434800	Weak transcription	Small Intestine	intestine
3	chr15:49393600-49413200	Weak transcription	HMEC	breast
4	chr15:49395400-49419000	Weak transcription	Fetal Kidney	kidney
5	chr15:49395600-49426400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:49396000-49419600	Weak transcription	NHEK	skin
7	chr15:49396400-49418800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:49398600-49427600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:49399200-49414600	Weak transcription	HUVEC	blood vessel
10	chr15:49403000-49417200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:49403000-49434600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:49403200-49413000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:49403200-49423400	Weak transcription	Psoas Muscle	Psoas
14	chr15:49403400-49419600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
16	chr15:49403600-49411200	Weak transcription	Fetal Intestine Small	intestine
17	chr15:49403600-49423600	Weak transcription	Esophagus	oesophagus
18	chr15:49403600-49432200	Weak transcription	Fetal Stomach	stomach
19	chr15:49403600-49435200	Weak transcription	Aorta	Aorta
20	chr15:49403600-49435200	Weak transcription	Gastric	stomach
21	chr15:49403600-49435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:49403800-49417400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:49403800-49419400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:49403800-49433200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:49404000-49419800	Weak transcription	NHLF	lung
26	chr15:49404400-49419800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:49404600-49424000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:49404800-49415400	Weak transcription	Hela-S3	cervix
29	chr15:49404800-49417200	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:49404800-49417600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:49404800-49419000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:49404800-49419000	Weak transcription	Primary T cells from cord blood	blood
33	chr15:49404800-49419000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:49404800-49419200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:49404800-49419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:49404800-49419400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:49404800-49419400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:49404800-49419600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr15:49404800-49419600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:49404800-49419600	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:49404800-49419600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:49404800-49419600	Weak transcription	Ovary	ovary
43	chr15:49404800-49419600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:49404800-49419800	Weak transcription	Left Ventricle	heart
45	chr15:49404800-49419800	Weak transcription	Thymus	Thymus
46	chr15:49404800-49423400	Weak transcription	HepG2	liver
47	chr15:49404800-49425600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:49404800-49434600	Weak transcription	Right Ventricle	heart
49	chr15:49404800-49435000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:49405000-49414000	Weak transcription	HSMM	muscle

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