Variant report

Variant	rs12438357
Chromosome Location	chr15:49380189-49380190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10519208	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11632520	0.92[ASN][1000 genomes]
rs11632976	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637601	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101442	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.82[EUR][1000 genomes]
rs12898709	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.86[ASN][1000 genomes]
rs2413930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505357	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575845	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790333	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4468544	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs568994	0.84[ASN][1000 genomes]
rs7497114	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9920070	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944174	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49376600-49397600	Weak transcription	NHLF	lung
6	chr15:49378200-49380400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:49378200-49380600	Weak transcription	Brain Angular Gyrus	brain
8	chr15:49378400-49380600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:49378400-49385000	Weak transcription	Placenta	Placenta
10	chr15:49378600-49381600	Enhancers	Brain Hippocampus Middle	brain
11	chr15:49378800-49380400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:49378800-49380600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:49378800-49381200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:49379400-49380400	Weak transcription	Brain Substantia Nigra	brain
16	chr15:49380000-49381600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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