Variant report

Variant	rs2413930
Chromosome Location	chr15:49375215-49375216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10519208	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11632520	0.92[ASN][1000 genomes]
rs11632976	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11637601	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858114	0.84[ASW][hapmap]
rs12101442	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12101599	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438175	0.82[EUR][1000 genomes]
rs12438357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440534	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12898709	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917024	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962243	0.83[JPT][hapmap]
rs1904317	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs2086256	0.84[ASW][hapmap]
rs2127242	0.84[ASW][hapmap]
rs2243899	0.81[ASN][1000 genomes]
rs2246995	0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs28505357	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575845	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28790333	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3098614	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs3098620	0.84[ASW][hapmap]
rs3105861	0.80[YRI][hapmap]
rs3105865	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs4468544	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775803	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs485182	0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs520949	0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap]
rs568994	0.84[ASN][1000 genomes]
rs586758	0.86[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs641077	0.82[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs7497114	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032650	0.86[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs9920070	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944174	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49369200-49377800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49374200-49375400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49374200-49376000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:49374400-49375400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49374400-49375400	Enhancers	NHDF-Ad	bronchial
7	chr15:49374600-49376200	Enhancers	Fetal Stomach	stomach
8	chr15:49374600-49376400	Enhancers	Fetal Lung	lung
9	chr15:49374600-49376600	Enhancers	NHLF	lung
10	chr15:49374800-49375800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr15:49375000-49376400	Enhancers	Osteobl	bone
12	chr15:49375000-49376800	Enhancers	Placenta	Placenta
13	chr15:49375200-49375600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:49375200-49376200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:49375200-49376200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:49375200-49376400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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