Variant report

Variant	rs12101442
Chromosome Location	chr15:49387174-49387175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49384437..49387309-chr15:49388507..49390532,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10519208	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11070681	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11632520	0.90[ASN][1000 genomes]
rs11632976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12101599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12438175	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12438357	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12440534	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12898709	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12917024	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16962243	0.86[JPT][hapmap]
rs1904317	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2243899	0.82[ASN][1000 genomes]
rs2246995	0.82[CHB][hapmap];0.96[JPT][hapmap];0.86[ASN][1000 genomes]
rs2413930	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28505357	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28575845	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28790333	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3098614	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3105865	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4468544	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775803	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs485182	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs520949	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs568994	0.84[ASN][1000 genomes]
rs586758	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs641077	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7497114	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032650	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9920070	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9944174	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:49376600-49397600	Weak transcription	NHLF	lung
5	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:49381800-49392400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:49381800-49395600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:49382400-49393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:49382600-49402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:49383400-49392800	Weak transcription	NH-A	brain
14	chr15:49384000-49392400	Weak transcription	HSMM	muscle
15	chr15:49385600-49403200	Weak transcription	Placenta	Placenta
16	chr15:49386000-49387400	Enhancers	Brain Cingulate Gyrus	brain
17	chr15:49386000-49387400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr15:49386400-49388400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:49386400-49395200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:49386400-49403400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:49386400-49404200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr15:49386800-49387200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:49386800-49387800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:49386800-49391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:49386800-49402600	Weak transcription	Gastric	stomach
26	chr15:49387000-49397400	Weak transcription	Primary T cells from cord blood	blood

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