Variant report

Variant	rs935003
Chromosome Location	chr15:49354811-49354812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49148960..49151118-chr15:49354539..49356746,2	K562	blood:
2	chr15:49351455..49354090-chr15:49354572..49357346,2	MCF-7	breast:
3	chr15:49349932..49352562-chr15:49353370..49355635,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11542124	0.82[ASN][1000 genomes]
rs11639379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858917	0.91[ASN][1000 genomes]
rs12904344	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12916287	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16962017	0.80[AMR][1000 genomes]
rs2413928	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4423366	0.80[AMR][1000 genomes]
rs7166261	0.90[ASN][1000 genomes]
rs8029751	0.93[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351400-49358800	Enhancers	Placenta	Placenta
2	chr15:49352200-49355200	Enhancers	Primary T cells from cord blood	blood
3	chr15:49352200-49356200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:49352400-49356800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:49353200-49356000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:49353200-49357400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr15:49353400-49355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:49353600-49355600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:49353600-49355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:49353600-49355800	Weak transcription	NHLF	lung
12	chr15:49353800-49355800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:49353800-49356000	Weak transcription	Hela-S3	cervix
14	chr15:49353800-49356200	Weak transcription	Fetal Thymus	thymus
15	chr15:49353800-49356600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:49354000-49355200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:49354000-49355800	Enhancers	Lung	lung
18	chr15:49354000-49358600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:49354200-49355200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:49354200-49355400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:49354400-49355600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:49354600-49355000	Enhancers	Ovary	ovary
23	chr15:49354800-49355200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:49354800-49355200	Active TSS	Brain Hippocampus Middle	brain
25	chr15:49354800-49355200	Enhancers	Brain Substantia Nigra	brain
26	chr15:49354800-49355600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:49354800-49356200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links