Variant report

Variant	rs626855
Chromosome Location	chr15:49456526-49456527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49438066..49440274-chr15:49455575..49457158,2	K562	blood:

Extended variants
information (count: 125 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs10467992	0.86[CHB][hapmap]
rs1048975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10775139	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs10851476	0.85[CEU][hapmap]
rs11070682	1.00[CHB][hapmap]
rs11070687	0.85[CEU][hapmap]
rs11629547	0.98[ASN][1000 genomes]
rs11630937	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11632063	0.96[ASN][1000 genomes]
rs11632386	0.82[EUR][1000 genomes]
rs11633810	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11854667	0.85[CEU][hapmap]
rs11858114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12437486	0.84[EUR][1000 genomes]
rs12438777	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12902875	0.81[ASN][1000 genomes]
rs12904344	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12909779	0.86[CEU][hapmap]
rs16962111	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1812926	0.83[ASN][1000 genomes]
rs1816293	0.82[CEU][hapmap]
rs1864299	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1981995	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2086256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2127241	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2127242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2127244	0.87[ASN][1000 genomes]
rs2163095	0.85[CEU][hapmap]
rs2163096	0.81[CEU][hapmap]
rs2169932	0.91[ASN][1000 genomes]
rs2219812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2247003	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2247517	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs2263559	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2264508	0.85[EUR][1000 genomes]
rs2289390	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2413935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2413937	0.96[ASN][1000 genomes]
rs2439133	0.83[EUR][1000 genomes]
rs2457228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457229	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2580923	0.98[ASN][1000 genomes]
rs2580926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2663088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2663089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2663090	0.91[ASN][1000 genomes]
rs28437582	0.90[ASN][1000 genomes]
rs28479967	0.96[ASN][1000 genomes]
rs28539950	0.96[ASN][1000 genomes]
rs28653543	0.85[EUR][1000 genomes]
rs28728368	0.96[ASN][1000 genomes]
rs28731311	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899427	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2899430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2899431	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs2919148	0.96[ASN][1000 genomes]
rs2940745	0.86[ASN][1000 genomes]
rs2940746	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3098613	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3098615	0.98[ASN][1000 genomes]
rs3098619	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs3098620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3098621	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs3105858	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs3105861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3105863	0.98[ASN][1000 genomes]
rs3105864	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105866	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34854443	0.98[ASN][1000 genomes]
rs3907313	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4393519	0.83[EUR][1000 genomes]
rs4421927	0.86[CEU][hapmap]
rs4774537	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4775804	0.88[ASN][1000 genomes]
rs4775805	0.89[ASN][1000 genomes]
rs4775807	0.84[ASN][1000 genomes]
rs481466	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs489813	0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs490621	0.92[ASN][1000 genomes]
rs500122	0.96[ASN][1000 genomes]
rs507054	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs520495	0.83[EUR][1000 genomes]
rs55736202	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563533	0.98[ASN][1000 genomes]
rs568726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600863	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs603868	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs604765	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs609434	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs612803	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs619045	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62009779	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs626295	0.88[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs633333	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs647118	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6493356	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes]
rs6493357	0.89[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs6493361	0.81[CHB][hapmap]
rs6493363	0.90[CHB][hapmap]
rs66499252	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs671945	0.97[ASN][1000 genomes]
rs672777	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs679957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs685172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694882	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7162360	0.85[CEU][hapmap]
rs7166847	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7167338	0.93[ASN][1000 genomes]
rs7167555	0.88[ASN][1000 genomes]
rs7168201	0.91[CEU][hapmap]
rs7169443	0.84[EUR][1000 genomes]
rs7176455	0.89[ASN][1000 genomes]
rs7179127	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs7179237	0.85[CEU][hapmap]
rs754165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs754166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs8024102	0.85[CEU][hapmap]
rs8025952	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs8031480	0.85[CEU][hapmap]
rs8039512	0.85[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs8039920	0.87[CEU][hapmap]
rs8040075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8040134	0.85[CEU][hapmap]
rs8182081	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs919447	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs626855	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49448800-49461400	Weak transcription	Small Intestine	intestine
2	chr15:49448800-49461800	Weak transcription	Colonic Mucosa	Colon
3	chr15:49448800-49461800	Weak transcription	Stomach Mucosa	stomach
4	chr15:49448800-49462000	Weak transcription	Placenta	Placenta
5	chr15:49448800-49462000	Weak transcription	Left Ventricle	heart
6	chr15:49448800-49462000	Weak transcription	Lung	lung
7	chr15:49448800-49462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:49448800-49462200	Weak transcription	Ovary	ovary
9	chr15:49448800-49462200	Weak transcription	Pancreas	Pancrea
10	chr15:49448800-49462200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:49448800-49462400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:49448800-49462400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:49448800-49462400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:49448800-49462400	Weak transcription	Spleen	Spleen
15	chr15:49449000-49461600	Weak transcription	Fetal Intestine Small	intestine
16	chr15:49449000-49461800	Weak transcription	Brain Germinal Matrix	brain
17	chr15:49449000-49462000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:49449000-49462000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:49449000-49462000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:49449000-49462000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:49449000-49462000	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:49449000-49462000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:49449000-49462200	Weak transcription	Thymus	Thymus
24	chr15:49449200-49461600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:49449200-49461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:49449200-49462000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:49449200-49462000	Weak transcription	Fetal Stomach	stomach
28	chr15:49449200-49462000	Weak transcription	Fetal Thymus	thymus
29	chr15:49449200-49462000	Weak transcription	NH-A	brain
30	chr15:49449400-49458000	Weak transcription	Brain Substantia Nigra	brain
31	chr15:49449400-49461600	Weak transcription	Brain Angular Gyrus	brain
32	chr15:49449400-49461800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:49449400-49461800	Weak transcription	Fetal Intestine Large	intestine
34	chr15:49449400-49461800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:49449400-49461800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:49449400-49462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:49449400-49462000	Weak transcription	Fetal Brain Female	brain
38	chr15:49449400-49462000	Weak transcription	Fetal Lung	lung
39	chr15:49449400-49462000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:49449600-49461200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:49449600-49461600	Weak transcription	NHDF-Ad	bronchial
42	chr15:49449600-49461800	Weak transcription	Primary B cells from cord blood	blood
43	chr15:49449600-49461800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:49449600-49461800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:49449600-49461800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:49449600-49461800	Weak transcription	Fetal Brain Male	brain
47	chr15:49449600-49461800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:49449600-49461800	Weak transcription	HUVEC	blood vessel
49	chr15:49449600-49462000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:49449600-49462200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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