Variant report

Variant	rs3105858
Chromosome Location	chr15:49530823-49530824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:49530263-49531170	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr15:49530474-49530983	SH-SY5Y	brain:	n/a	n/a
3	EP300	chr15:49530470-49530983	SK-N-SH_RA	brain:	n/a	n/a
4	RAD21	chr15:49530569-49531065	IMR90	lung:	n/a	n/a
5	GATA2	chr15:49530400-49530956	SH-SY5Y	brain:	n/a	n/a
6	MAFK	chr15:49530597-49530902	IMR90	lung:	n/a	n/a
7	JUND	chr15:49530394-49531002	SK-N-SH	brain:	n/a	n/a
8	EP300	chr15:49530431-49531135	SK-N-SH	brain:	n/a	n/a
9	YY1	chr15:49530515-49530883	SK-N-SH_RA	brain:	n/a	chr15:49530528-49530544
10	TEAD4	chr15:49530436-49531080	SK-N-SH	brain:	n/a	n/a
11	REST	chr15:49530633-49530848	SK-N-SH	brain:	n/a	n/a
12	FOSL2	chr15:49530420-49531077	SK-N-SH	brain:	n/a	n/a
13	EP300	chr15:49530392-49531184	SK-N-SH	brain:	n/a	n/a
14	PBX3	chr15:49530327-49531100	SK-N-SH	brain:	n/a	n/a
15	POLR2A	chr15:49530574-49530823	SK-N-SH	brain:	n/a	n/a
16	POLR2A	chr15:49530808-49530823	Hela-S3	cervix:	n/a	n/a
17	GATA3	chr15:49530338-49531138	SK-N-SH	brain:	n/a	n/a
18	PBX3	chr15:49530422-49531093	SK-N-SH	brain:	n/a	n/a
19	RAD21	chr15:49530613-49530979	SK-N-SH_RA	brain:	n/a	n/a
20	RAD21	chr15:49529885-49532387	SK-N-SH	brain:	n/a	n/a
21	TEAD4	chr15:49530385-49531070	SK-N-SH	brain:	n/a	n/a
22	TCF12	chr15:49530181-49531090	SK-N-SH	brain:	n/a	n/a
23	NFIC	chr15:49530543-49531040	SK-N-SH	brain:	n/a	n/a
24	FOS	chr15:49530687-49530829	MCF10A-Er-Src	breast:	n/a	n/a
25	RAD21	chr15:49530538-49530992	SK-N-SH_RA	brain:	n/a	n/a
26	SIN3AK20	chr15:49530544-49530922	SK-N-SH	brain:	n/a	n/a
27	POLR2A	chr15:49530462-49531035	SK-N-SH	brain:	n/a	n/a
28	TCF12	chr15:49530268-49531738	SK-N-SH	brain:	n/a	n/a
29	EP300	chr15:49529875-49532539	SK-N-SH	brain:	n/a	chr15:49531958-49531972 chr15:49530330-49530344
30	TAF1	chr15:49530673-49530936	SK-N-SH	brain:	n/a	n/a
31	MAX	chr15:49530585-49531053	SK-N-SH	brain:	n/a	n/a
32	NFIC	chr15:49530367-49531250	SK-N-SH	brain:	n/a	n/a
33	EP300	chr15:49530432-49531029	SK-N-SH_RA	brain:	n/a	n/a
34	CEBPB	chr15:49530234-49531016	IMR90	lung:	n/a	chr15:49530331-49530348

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49461247..49464422-chr15:49530030..49534036,3	K562	blood:

Variant related genes	Relation type
GALK2	TF binding region
ENSG00000264210	Chromatin interaction
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10467993	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1048975	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs10775139	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs10851475	0.85[CHB][hapmap]
rs10851476	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[YRI][hapmap]
rs11070682	0.85[CHB][hapmap]
rs11070685	0.87[YRI][hapmap]
rs11070687	0.96[CEU][hapmap];0.86[CHB][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11630937	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11632386	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11633810	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11852825	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11854667	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11858114	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12437486	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12438777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12899761	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12902497	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12903238	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12903904	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12904171	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12909779	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12915792	0.83[YRI][hapmap]
rs12916840	0.96[CEU][hapmap];0.81[CHB][hapmap];0.97[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1594188	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16962111	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1816293	0.93[CEU][hapmap];0.86[CHB][hapmap];0.97[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1864299	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1904313	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1981995	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2043036	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2086256	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2099141	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2127241	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2127242	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2163095	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2163096	0.92[CEU][hapmap];0.85[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2219812	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2244224	0.81[YRI][hapmap]
rs2247003	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2247517	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2263559	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2264508	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2289390	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2413935	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2413941	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2439133	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2457228	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs2457229	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2580926	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2663088	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs2663089	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs2663091	0.81[YRI][hapmap]
rs28374976	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28566064	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28653543	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28687437	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28731311	0.82[EUR][1000 genomes]
rs2899427	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2899428	0.80[YRI][hapmap]
rs2899430	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2899431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2940746	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3098613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3098619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3098620	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs3098621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3105861	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs3105864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3105866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3907313	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4393519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4421927	0.96[CEU][hapmap];0.90[CHB][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4508377	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4774537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4775801	0.83[YRI][hapmap]
rs4775810	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs481466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs489813	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs507054	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs520495	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55736202	0.81[EUR][1000 genomes]
rs568726	0.89[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs577614	0.90[YRI][hapmap]
rs58851861	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs600863	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs603868	0.82[EUR][1000 genomes]
rs604765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs609434	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs612803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs619045	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62009779	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs626295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs626855	0.89[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs633333	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs647118	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs6493356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6493359	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6493362	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6493366	0.83[YRI][hapmap]
rs6493367	0.83[YRI][hapmap]
rs66499252	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs672777	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs679957	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs685172	0.89[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs694882	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7162360	0.96[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7166847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7168201	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7169443	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7173761	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7176697	0.81[YRI][hapmap]
rs7177959	0.86[YRI][hapmap]
rs7179127	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7179237	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs754165	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs754166	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs8024102	0.96[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8025237	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8025952	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs8031480	0.96[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8034956	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8035266	0.85[EUR][1000 genomes]
rs8039512	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8039920	0.96[CEU][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8040075	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs8040116	0.87[YRI][hapmap]
rs8040134	0.96[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8041461	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8182081	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs919447	0.96[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9806208	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9806776	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs981612	0.83[CEU][hapmap];0.83[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3105858	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
2	chr15:49487200-49531200	Weak transcription	HMEC	breast
3	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
4	chr15:49508800-49535800	Weak transcription	A549	lung
5	chr15:49510000-49541800	Weak transcription	NHEK	skin
6	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:49510800-49534400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:49511800-49531400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:49511800-49532200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:49516000-49531400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:49518000-49535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:49518000-49541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
14	chr15:49518600-49532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
16	chr15:49518800-49539200	Weak transcription	Ovary	ovary
17	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
18	chr15:49520600-49531200	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:49520800-49531400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:49522000-49534600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:49522000-49537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:49522000-49538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:49522000-49540400	Weak transcription	Stomach Mucosa	stomach
24	chr15:49522200-49531400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr15:49522200-49535000	Weak transcription	Left Ventricle	heart
26	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
27	chr15:49522600-49534400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:49522600-49535200	Weak transcription	Gastric	stomach
29	chr15:49522800-49531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:49523800-49534800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:49523800-49540200	Weak transcription	Spleen	Spleen
32	chr15:49524600-49531400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr15:49524600-49531400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:49524600-49531400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr15:49524600-49535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:49524600-49535200	Weak transcription	Placenta	Placenta
37	chr15:49524600-49535200	Weak transcription	Thymus	Thymus
38	chr15:49524600-49539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:49524600-49544800	Weak transcription	Lung	lung
40	chr15:49524800-49531400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:49525000-49531400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:49525000-49534600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:49525200-49531400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:49525200-49531400	Weak transcription	HepG2	liver
45	chr15:49525200-49535000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:49525200-49535000	Weak transcription	Fetal Intestine Large	intestine
47	chr15:49525400-49535200	Weak transcription	Fetal Intestine Small	intestine
48	chr15:49526200-49531200	Weak transcription	Primary B cells from cord blood	blood
49	chr15:49526200-49531200	Weak transcription	Primary T cells from cord blood	blood
50	chr15:49526200-49534600	Weak transcription	K562	blood

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