Variant report

Variant	rs6493367
Chromosome Location	chr15:49655169-49655170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10851476	0.83[YRI][hapmap]
rs11070685	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11070687	0.86[YRI][hapmap]
rs11854667	0.83[YRI][hapmap]
rs12232354	0.82[CHB][hapmap]
rs12591134	0.93[YRI][hapmap]
rs12591875	0.86[AFR][1000 genomes]
rs12708418	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12898461	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs12898877	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12902497	0.80[AFR][1000 genomes]
rs12903992	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs12909779	0.83[YRI][hapmap]
rs12910584	0.83[CHB][hapmap]
rs12914592	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12915792	0.83[EUR][1000 genomes]
rs12916078	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs12916840	0.86[YRI][hapmap]
rs13379615	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13380075	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1583060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16962418	0.89[CEU][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs16962419	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16962434	0.83[CHB][hapmap]
rs1816293	0.86[YRI][hapmap]
rs1864299	0.81[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs1961692	0.84[AFR][1000 genomes]
rs1981995	0.83[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs2163095	0.83[YRI][hapmap]
rs2163096	0.83[YRI][hapmap]
rs2247517	0.86[YRI][hapmap]
rs2413943	0.80[LWK][hapmap];0.90[MKK][hapmap]
rs2413944	0.82[LWK][hapmap];0.90[MKK][hapmap]
rs28871982	0.86[AFR][1000 genomes]
rs3098613	0.83[LWK][hapmap];0.83[YRI][hapmap]
rs3098619	0.81[LWK][hapmap]
rs3098621	0.86[YRI][hapmap]
rs3105858	0.83[YRI][hapmap]
rs3105864	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs34148901	0.83[EUR][1000 genomes]
rs34505850	0.83[EUR][1000 genomes]
rs35001785	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35274049	0.86[EUR][1000 genomes]
rs3907313	0.86[YRI][hapmap]
rs4421927	0.86[YRI][hapmap]
rs4774537	0.80[YRI][hapmap]
rs4775801	0.89[YRI][hapmap]
rs478500	0.89[CEU][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs481466	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs577614	0.86[EUR][1000 genomes]
rs626295	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs6493351	0.84[EUR][1000 genomes]
rs6493356	0.84[YRI][hapmap]
rs6493357	0.81[YRI][hapmap]
rs6493366	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs71467666	0.86[EUR][1000 genomes]
rs71467668	0.86[EUR][1000 genomes]
rs71467676	0.83[EUR][1000 genomes]
rs7162360	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs7162373	0.82[LWK][hapmap];0.92[MKK][hapmap]
rs7166491	0.95[EUR][1000 genomes]
rs7166847	0.86[YRI][hapmap]
rs7176697	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs7177959	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7179127	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs7179237	0.83[YRI][hapmap]
rs8024102	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs8026364	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8029538	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8031480	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs8036293	0.86[EUR][1000 genomes]
rs8039920	0.80[YRI][hapmap]
rs8040116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs8040134	0.83[YRI][hapmap]
rs919447	0.81[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs9806362	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs981612	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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