Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49639583..49641863-chr15:49642641..49645261,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11070685	0.83[CHB][hapmap]
rs12898461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12898877	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12903654	0.81[ASN][1000 genomes]
rs12903992	0.90[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs12910584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12916078	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1429555	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16962414	0.81[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs16962418	0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs16962419	0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs16962434	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34148901	0.84[ASN][1000 genomes]
rs35251997	0.85[ASN][1000 genomes]
rs577614	0.90[CHB][hapmap]
rs6493366	0.82[CHB][hapmap]
rs6493367	0.82[CHB][hapmap]
rs71467676	0.86[ASN][1000 genomes]
rs7177959	0.83[CHB][hapmap]
rs8029538	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs8040116	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49623200-49646000	Weak transcription	Left Ventricle	heart
2	chr15:49623400-49647600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:49636200-49645200	Weak transcription	HUVEC	blood vessel
4	chr15:49637600-49644000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:49643000-49644600	ZNF genes & repeats	Aorta	Aorta

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