Variant report

Variant	rs12903992
Chromosome Location	chr15:49687943-49687944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11070685	0.89[CEU][hapmap]
rs12232354	0.90[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs12591799	1.00[YRI][hapmap]
rs12592177	1.00[YRI][hapmap]
rs12592296	1.00[YRI][hapmap]
rs12593068	1.00[YRI][hapmap]
rs12594154	1.00[YRI][hapmap]
rs12594827	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs12595497	1.00[YRI][hapmap]
rs12708418	0.97[EUR][1000 genomes]
rs12898461	0.89[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12898877	1.00[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs12903654	0.85[ASN][1000 genomes]
rs12910584	0.91[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap]
rs12914592	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs12916078	0.89[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs13379615	0.97[EUR][1000 genomes]
rs13380075	0.97[EUR][1000 genomes]
rs1429555	0.81[CHD][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs1583060	1.00[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs16962414	0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16962418	1.00[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962419	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962434	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs34148901	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35001785	0.97[EUR][1000 genomes]
rs35251997	0.90[ASN][1000 genomes]
rs3809495	1.00[YRI][hapmap]
rs478500	0.89[CEU][hapmap]
rs6493366	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[TSI][hapmap]
rs6493367	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[TSI][hapmap]
rs71467676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71467680	0.84[ASN][1000 genomes]
rs7177959	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs7183666	0.81[ASN][1000 genomes]
rs8026364	0.81[EUR][1000 genomes]
rs8040116	1.00[CEU][hapmap]
rs9806362	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49687600-49688000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr15:49687600-49688000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:49687600-49688000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr15:49687600-49688200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:49687600-49688200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:49687600-49688200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr15:49687600-49688400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:49687600-49688400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:49687600-49688600	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr15:49687600-49688600	Active TSS	H1 Cell Line	embryonic stem cell
11	chr15:49687800-49688000	Flanking Active TSS	K562	blood
12	chr15:49687800-49688200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:49687800-49688600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr15:49687800-49688600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:49687800-49688600	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links