Variant report

Variant	rs7177959
Chromosome Location	chr15:49585979-49585980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10851476	0.80[YRI][hapmap]
rs11070685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11070687	0.83[YRI][hapmap]
rs11633810	0.86[YRI][hapmap]
rs11854667	0.80[YRI][hapmap]
rs12232354	0.83[CHB][hapmap]
rs12438777	0.86[YRI][hapmap]
rs12591134	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs12591875	0.88[AFR][1000 genomes]
rs12708418	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12898461	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs12898877	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs12903992	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs12909779	0.80[YRI][hapmap]
rs12910584	0.84[CHB][hapmap]
rs12914592	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12915792	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12916078	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs12916840	0.83[YRI][hapmap]
rs13379615	0.82[EUR][1000 genomes]
rs13380075	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1583060	0.89[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs16962418	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs16962419	0.89[CEU][hapmap]
rs16962434	0.83[CHB][hapmap]
rs1816293	0.83[YRI][hapmap]
rs1864299	0.83[YRI][hapmap]
rs1981995	0.81[LWK][hapmap];0.83[YRI][hapmap]
rs2163095	0.80[YRI][hapmap]
rs2163096	0.80[YRI][hapmap]
rs2244224	0.93[YRI][hapmap]
rs2247517	0.83[YRI][hapmap]
rs2413943	0.82[LWK][hapmap]
rs2413944	0.84[LWK][hapmap]
rs2439132	0.83[AFR][1000 genomes]
rs2663091	0.93[YRI][hapmap]
rs28871982	0.88[AFR][1000 genomes]
rs2899428	0.93[ASW][hapmap];0.86[LWK][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap]
rs2899431	0.83[YRI][hapmap]
rs3098613	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs3098619	0.80[MKK][hapmap];0.83[YRI][hapmap]
rs3098621	0.83[YRI][hapmap]
rs3105858	0.86[YRI][hapmap]
rs3105864	0.86[YRI][hapmap]
rs3105866	0.86[YRI][hapmap]
rs35001785	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35274049	0.89[EUR][1000 genomes]
rs3907313	0.83[YRI][hapmap]
rs4421927	0.83[YRI][hapmap]
rs4775801	0.92[YRI][hapmap]
rs478500	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs481466	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs489813	0.81[LWK][hapmap];0.86[YRI][hapmap]
rs577614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs604765	0.86[YRI][hapmap]
rs612803	0.83[YRI][hapmap]
rs626295	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs6493351	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493356	0.89[YRI][hapmap]
rs6493357	0.85[YRI][hapmap]
rs6493366	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs6493367	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs71467666	0.89[EUR][1000 genomes]
rs71467668	0.89[EUR][1000 genomes]
rs7162360	0.83[YRI][hapmap]
rs7162373	0.84[LWK][hapmap];0.81[MKK][hapmap]
rs7166491	0.98[EUR][1000 genomes]
rs7166847	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs7176697	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs7179127	0.83[YRI][hapmap]
rs8024102	0.83[YRI][hapmap]
rs8026364	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8029538	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8030581	0.86[YRI][hapmap]
rs8031480	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs8034734	0.87[AFR][1000 genomes]
rs8036293	0.89[EUR][1000 genomes]
rs8040116	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040134	0.80[MKK][hapmap];0.86[YRI][hapmap]
rs919447	0.83[YRI][hapmap]
rs9806362	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs981612	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
6	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
7	chr15:49561000-49600800	Weak transcription	Pancreas	Pancrea
8	chr15:49562000-49595800	Weak transcription	HepG2	liver
9	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:49563600-49611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:49564000-49586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:49564000-49593600	Weak transcription	HMEC	breast
13	chr15:49564200-49593600	Weak transcription	Lung	lung
14	chr15:49565400-49602000	Weak transcription	Fetal Heart	heart
15	chr15:49566000-49586200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:49566200-49611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:49566400-49595600	Weak transcription	Gastric	stomach
18	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:49572000-49595800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:49572800-49600800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:49573600-49613000	Weak transcription	Brain Germinal Matrix	brain
22	chr15:49573800-49588400	Weak transcription	Fetal Kidney	kidney
23	chr15:49573800-49622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:49574000-49588400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:49574200-49589000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr15:49574600-49588800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:49575600-49586800	Weak transcription	NH-A	brain
28	chr15:49575600-49587000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:49576400-49593600	Weak transcription	Stomach Mucosa	stomach
30	chr15:49576600-49589600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:49576600-49605600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr15:49576800-49611800	Weak transcription	Thymus	Thymus
33	chr15:49577000-49605800	Weak transcription	A549	lung
34	chr15:49577200-49607000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:49577600-49605400	Weak transcription	Fetal Intestine Small	intestine
36	chr15:49577800-49596600	Weak transcription	HSMM	muscle
37	chr15:49577800-49611600	Weak transcription	Fetal Brain Female	brain
38	chr15:49578000-49588200	Weak transcription	Psoas Muscle	Psoas
39	chr15:49578000-49596400	Weak transcription	Placenta	Placenta
40	chr15:49578200-49590400	Weak transcription	Brain Anterior Caudate	brain
41	chr15:49578200-49593600	Weak transcription	Osteobl	bone
42	chr15:49578200-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:49578200-49604400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:49578200-49611000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:49578400-49605400	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:49578400-49611200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:49578600-49587600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:49579400-49612000	Weak transcription	HUVEC	blood vessel
49	chr15:49579800-49587600	Strong transcription	Primary B cells from cord blood	blood
50	chr15:49580000-49588800	Strong transcription	Primary T cells from cord blood	blood

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