Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11070685	0.83[CHB][hapmap]
rs12232354	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12898461	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12898877	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12903654	0.95[ASN][1000 genomes]
rs12903992	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12910584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12914592	0.81[CHB][hapmap]
rs12916078	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1429555	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583060	0.83[CHB][hapmap]
rs16962414	0.91[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs16962418	0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs16962419	0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs34148901	0.89[ASN][1000 genomes]
rs35251997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493366	0.83[CHB][hapmap]
rs6493367	0.83[CHB][hapmap]
rs71467676	0.90[ASN][1000 genomes]
rs71467680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7177959	0.83[CHB][hapmap]
rs7183666	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8040116	0.83[CHB][hapmap]
rs9635334	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49708200-49713400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:49708200-49713800	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:49708400-49713800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:49708400-49714400	Weak transcription	HUVEC	blood vessel
5	chr15:49708600-49714000	Weak transcription	Osteobl	bone
6	chr15:49709800-49713600	Weak transcription	Fetal Lung	lung
7	chr15:49709800-49715200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:49711600-49713600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: