Variant report

Variant	rs12903654
Chromosome Location	chr15:49745677-49745678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12232354	0.81[ASN][1000 genomes]
rs12903992	0.85[ASN][1000 genomes]
rs1429555	0.95[ASN][1000 genomes]
rs16962414	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16962418	0.84[ASN][1000 genomes]
rs16962419	0.84[ASN][1000 genomes]
rs16962434	0.95[ASN][1000 genomes]
rs34148901	0.84[ASN][1000 genomes]
rs35251997	0.95[ASN][1000 genomes]
rs71467676	0.85[ASN][1000 genomes]
rs71467680	0.99[ASN][1000 genomes]
rs7183666	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv9263	chr15:49734435-49809465	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv526246	chr15:49738233-49749735	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49732000-49750200	Weak transcription	HSMM	muscle
2	chr15:49737000-49751200	Weak transcription	Ovary	ovary
3	chr15:49741800-49747400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr15:49742000-49752000	Weak transcription	Adipose Nuclei	Adipose
5	chr15:49742800-49748000	Weak transcription	Fetal Heart	heart
6	chr15:49742800-49750400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:49743000-49748000	Weak transcription	Fetal Lung	lung
8	chr15:49743200-49745800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:49743200-49747200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:49743200-49748400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:49744400-49747200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:49745000-49748200	Weak transcription	NHLF	lung
13	chr15:49745400-49745800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:49745400-49746400	Strong transcription	Osteobl	bone
15	chr15:49745600-49746200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:49745600-49746200	Enhancers	Colon Smooth Muscle	Colon
17	chr15:49745600-49746800	Strong transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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