Variant report

Variant	rs16962414
Chromosome Location	chr15:49676889-49676890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12232354	0.81[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs12898461	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs12898877	0.82[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap]
rs12903654	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12903992	0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12910584	0.82[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes]
rs12916078	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs1429555	0.88[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.88[ASN][1000 genomes]
rs16962418	0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16962419	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16962434	0.91[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs34148901	0.96[ASN][1000 genomes]
rs35251997	0.88[ASN][1000 genomes]
rs71467676	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs71467680	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49673800-49683400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49674400-49677400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr15:49676400-49683600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:49676600-49683400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr15:49676800-49683000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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