Variant report

Variant	rs11070685
Chromosome Location	chr15:49512949-49512950
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10851476	0.80[YRI][hapmap]
rs11070687	0.84[YRI][hapmap]
rs11633810	0.86[YRI][hapmap]
rs11854667	0.80[YRI][hapmap]
rs12232354	0.83[CHB][hapmap]
rs12438777	0.87[YRI][hapmap]
rs12591134	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs12898461	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes]
rs12898877	0.89[CEU][hapmap];0.84[CHB][hapmap];0.89[EUR][1000 genomes]
rs12903992	0.89[CEU][hapmap]
rs12909779	0.82[YRI][hapmap]
rs12910584	0.84[CHB][hapmap]
rs12914592	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs12915792	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12916078	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes]
rs12916840	0.84[YRI][hapmap]
rs1583060	0.89[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap]
rs16962418	1.00[CEU][hapmap]
rs16962419	0.89[CEU][hapmap]
rs16962434	0.83[CHB][hapmap]
rs1816293	0.84[YRI][hapmap]
rs1864299	0.83[YRI][hapmap]
rs1981995	0.83[YRI][hapmap]
rs2163095	0.82[YRI][hapmap]
rs2163096	0.80[YRI][hapmap]
rs2244224	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs2247517	0.84[YRI][hapmap]
rs2439132	0.92[AFR][1000 genomes]
rs2457227	0.81[AFR][1000 genomes]
rs2663091	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs2899428	0.93[YRI][hapmap]
rs2899431	0.84[YRI][hapmap]
rs3098613	0.86[YRI][hapmap]
rs3098619	0.83[YRI][hapmap]
rs3098621	0.84[YRI][hapmap]
rs3105858	0.87[YRI][hapmap]
rs3105864	0.86[YRI][hapmap]
rs3105866	0.87[YRI][hapmap]
rs34505850	0.86[EUR][1000 genomes]
rs35274049	0.98[EUR][1000 genomes]
rs3907313	0.84[YRI][hapmap]
rs4421927	0.84[YRI][hapmap]
rs4775801	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs478500	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs481466	0.86[YRI][hapmap]
rs489813	0.87[YRI][hapmap]
rs577614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs604765	0.87[YRI][hapmap]
rs612803	0.84[YRI][hapmap]
rs626295	0.86[YRI][hapmap]
rs6493351	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6493356	0.89[YRI][hapmap]
rs6493357	0.86[YRI][hapmap]
rs6493366	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap]
rs6493367	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs71394957	0.81[EUR][1000 genomes]
rs71467666	0.98[EUR][1000 genomes]
rs71467668	0.98[EUR][1000 genomes]
rs7162360	0.83[YRI][hapmap]
rs7166491	0.89[EUR][1000 genomes]
rs7166847	0.84[YRI][hapmap]
rs7176697	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs7177959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7179127	0.83[YRI][hapmap]
rs7179237	0.81[YRI][hapmap]
rs8024102	0.83[YRI][hapmap]
rs8026364	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8029538	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs8030581	0.87[YRI][hapmap]
rs8031480	0.86[YRI][hapmap]
rs8036293	0.98[EUR][1000 genomes]
rs8040116	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8040134	0.86[YRI][hapmap]
rs919447	0.83[YRI][hapmap]
rs9806362	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs981612	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:49463600-49527800	Weak transcription	HSMM	muscle
3	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
4	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:49487200-49531200	Weak transcription	HMEC	breast
6	chr15:49492000-49517600	Weak transcription	NHLF	lung
7	chr15:49492000-49520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:49492000-49527800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:49492000-49530200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
11	chr15:49492800-49514600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:49493000-49520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:49494000-49518600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:49495000-49515600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:49495000-49515800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:49495000-49518000	Weak transcription	Placenta	Placenta
17	chr15:49495200-49520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:49503600-49524000	Weak transcription	HepG2	liver
19	chr15:49504200-49513000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:49504200-49513800	Weak transcription	Fetal Lung	lung
21	chr15:49504200-49520200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:49504200-49530800	Weak transcription	Fetal Thymus	thymus
23	chr15:49506400-49513600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:49507200-49517400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:49507400-49515600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:49508600-49515600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:49508600-49517400	Weak transcription	Right Ventricle	heart
28	chr15:49508800-49515000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:49508800-49515800	Weak transcription	Psoas Muscle	Psoas
30	chr15:49508800-49517400	Weak transcription	Esophagus	oesophagus
31	chr15:49508800-49517600	Weak transcription	Spleen	Spleen
32	chr15:49508800-49521600	Weak transcription	Hela-S3	cervix
33	chr15:49508800-49535800	Weak transcription	A549	lung
34	chr15:49509000-49513600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:49509000-49517400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:49509000-49517400	Weak transcription	Pancreas	Pancrea
37	chr15:49509000-49517400	Weak transcription	Right Atrium	heart
38	chr15:49509200-49517400	Weak transcription	Primary B cells from cord blood	blood
39	chr15:49509200-49517400	Weak transcription	Gastric	stomach
40	chr15:49509200-49517800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:49509400-49513000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:49509400-49517200	Weak transcription	Fetal Heart	heart
43	chr15:49509400-49527400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:49509600-49513000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:49510000-49541800	Weak transcription	NHEK	skin
46	chr15:49510200-49524600	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:49510800-49534400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:49511000-49513200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:49511000-49515200	Weak transcription	K562	blood

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