Variant report

Variant	rs12914592
Chromosome Location	chr15:49674147-49674148
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11070685	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs12591134	0.81[YRI][hapmap]
rs12708418	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12898461	0.88[CEU][hapmap]
rs12898877	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12903992	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs12916078	0.88[CEU][hapmap]
rs13379615	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13380075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1583060	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16962418	0.88[CEU][hapmap];0.90[CHB][hapmap];0.97[EUR][1000 genomes]
rs16962419	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[EUR][1000 genomes]
rs16962434	0.81[CHB][hapmap]
rs16962436	0.92[YRI][hapmap]
rs1961692	0.89[AFR][1000 genomes]
rs2413943	0.92[YRI][hapmap]
rs2413944	0.92[YRI][hapmap]
rs2413945	0.81[YRI][hapmap]
rs34148901	0.97[EUR][1000 genomes]
rs35001785	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4332689	0.92[YRI][hapmap]
rs478500	0.88[CEU][hapmap]
rs6493366	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6493367	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs71467676	0.97[EUR][1000 genomes]
rs7162373	0.92[YRI][hapmap]
rs7166491	0.81[EUR][1000 genomes]
rs7177959	0.88[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs8026364	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8040116	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9806362	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49670800-49675400	Weak transcription	NHLF	lung
2	chr15:49671000-49674200	Weak transcription	Gastric	stomach
3	chr15:49672600-49674600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:49673400-49674800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:49673400-49675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:49673400-49675400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:49673400-49676000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:49673400-49676200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:49673600-49674800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:49673600-49675400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:49673600-49676000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:49673600-49676200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:49673800-49683400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:49674000-49674400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:49674000-49675000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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