Variant report

Variant	rs4332689
Chromosome Location	chr15:49734324-49734325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12591134	0.86[YRI][hapmap]
rs12914592	0.92[YRI][hapmap]
rs1583060	0.93[YRI][hapmap]
rs16962436	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1961692	0.87[AFR][1000 genomes]
rs2413943	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2413944	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2413945	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs2899437	0.80[YRI][hapmap]
rs7162373	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7176697	0.83[YRI][hapmap]
rs8031680	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49716400-49737200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:49721000-49736200	Weak transcription	Right Ventricle	heart
3	chr15:49730400-49744600	Weak transcription	NHLF	lung
4	chr15:49731600-49734600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:49731600-49734600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:49732000-49736600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr15:49732000-49750200	Weak transcription	HSMM	muscle
8	chr15:49732200-49736200	Weak transcription	Ovary	ovary
9	chr15:49732200-49736200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:49732400-49736800	Weak transcription	Fetal Stomach	stomach
11	chr15:49732400-49738200	Weak transcription	NHDF-Ad	bronchial
12	chr15:49732800-49741000	Weak transcription	Fetal Heart	heart
13	chr15:49733200-49735200	Enhancers	Colon Smooth Muscle	Colon
14	chr15:49733200-49741800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:49733600-49734400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:49733600-49734800	Enhancers	Osteobl	bone
17	chr15:49733600-49735200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:49733800-49734600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:49733800-49734800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:49733800-49736200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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