Variant report

Variant	rs7176697
Chromosome Location	chr15:49606972-49606973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10519227	1.00[CHB][hapmap]
rs11070685	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs11633810	0.80[YRI][hapmap]
rs12438777	0.81[YRI][hapmap]
rs12591134	1.00[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591799	1.00[CHB][hapmap]
rs12591875	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592177	1.00[CHB][hapmap]
rs12592296	1.00[CHB][hapmap]
rs12593068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12593119	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594154	1.00[CHB][hapmap]
rs12594448	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12594827	1.00[CHB][hapmap]
rs12595497	1.00[CHB][hapmap]
rs12915792	0.89[YRI][hapmap]
rs16962436	0.83[YRI][hapmap]
rs17477923	1.00[CHB][hapmap]
rs1961692	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2244224	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2413943	0.82[YRI][hapmap]
rs2413944	0.82[YRI][hapmap]
rs2439132	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663091	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28871982	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2899428	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2899431	0.84[YRI][hapmap]
rs3098613	0.80[YRI][hapmap]
rs3105858	0.81[YRI][hapmap]
rs3105864	0.80[YRI][hapmap]
rs3105866	0.81[YRI][hapmap]
rs3809495	1.00[CHB][hapmap]
rs4332689	0.83[YRI][hapmap]
rs4338740	1.00[CHB][hapmap]
rs4775801	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs481466	0.80[YRI][hapmap]
rs489813	0.81[YRI][hapmap]
rs56107345	1.00[ASN][1000 genomes]
rs56875838	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs577614	0.93[YRI][hapmap]
rs604765	0.81[YRI][hapmap]
rs626295	0.80[YRI][hapmap]
rs6493356	0.82[YRI][hapmap]
rs6493366	0.89[YRI][hapmap]
rs6493367	0.89[YRI][hapmap]
rs7162373	0.82[YRI][hapmap]
rs7168316	1.00[CHB][hapmap]
rs7177959	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs7178112	1.00[EUR][1000 genomes]
rs73392212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406202	1.00[EUR][1000 genomes]
rs8026364	0.83[AFR][1000 genomes]
rs8030581	1.00[EUR][1000 genomes]
rs8031480	0.80[YRI][hapmap]
rs8034734	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040116	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs8040134	0.80[YRI][hapmap]
rs9806362	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
4	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
5	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:49563600-49611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:49566200-49611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:49573600-49613000	Weak transcription	Brain Germinal Matrix	brain
10	chr15:49573800-49622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:49576800-49611800	Weak transcription	Thymus	Thymus
12	chr15:49577200-49607000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:49577800-49611600	Weak transcription	Fetal Brain Female	brain
14	chr15:49578200-49611000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:49578400-49611200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:49579400-49612000	Weak transcription	HUVEC	blood vessel
17	chr15:49580600-49615600	Weak transcription	Fetal Brain Male	brain
18	chr15:49581200-49607400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:49581400-49607600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:49582200-49611400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:49582600-49628200	Weak transcription	Spleen	Spleen
22	chr15:49583200-49611400	Weak transcription	Small Intestine	intestine
23	chr15:49584000-49607400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:49584000-49607400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:49585600-49607200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:49585600-49612800	Weak transcription	Fetal Thymus	thymus
27	chr15:49586000-49617000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:49586200-49611200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:49588800-49607400	Weak transcription	Brain Substantia Nigra	brain
30	chr15:49588800-49611200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:49588800-49611600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:49589200-49607400	Weak transcription	Brain Angular Gyrus	brain
33	chr15:49594000-49619400	Weak transcription	Stomach Mucosa	stomach
34	chr15:49594600-49607600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr15:49595800-49611200	Weak transcription	Aorta	Aorta
36	chr15:49596200-49611400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:49596800-49611000	Weak transcription	Placenta	Placenta
38	chr15:49596800-49611800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:49596800-49620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:49597000-49607800	Weak transcription	Gastric	stomach
41	chr15:49597000-49611800	Weak transcription	Brain Anterior Caudate	brain
42	chr15:49597000-49612000	Weak transcription	HepG2	liver
43	chr15:49597200-49611000	Weak transcription	Dnd41	blood
44	chr15:49597200-49613200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:49597200-49622200	Weak transcription	NH-A	brain
46	chr15:49597200-49624800	Weak transcription	Fetal Kidney	kidney
47	chr15:49597400-49610200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:49597400-49611000	Weak transcription	Fetal Intestine Large	intestine
49	chr15:49597400-49624200	Weak transcription	K562	blood
50	chr15:49597600-49607000	Weak transcription	Fetal Lung	lung

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