Variant report

Variant	rs73392212
Chromosome Location	chr15:49493930-49493931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49486635..49489834-chr15:49492357..49494920,3	K562	blood:
2	chr15:49486635..49490879-chr15:49492357..49495166,4	K562	blood:
3	chr15:49461934..49463873-chr15:49491426..49493979,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12591134	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591875	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594448	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1961692	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2244224	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2439132	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663091	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28871982	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2899428	1.00[EUR][1000 genomes]
rs4775801	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56107345	1.00[ASN][1000 genomes]
rs56875838	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7176697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178112	1.00[EUR][1000 genomes]
rs73406202	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030581	1.00[EUR][1000 genomes]
rs8034734	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
3	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:49463600-49527800	Weak transcription	HSMM	muscle
5	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
6	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:49465200-49494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
9	chr15:49467600-49494200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:49468400-49494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
12	chr15:49478000-49494400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:49478000-49496000	Weak transcription	Primary T cells from cord blood	blood
14	chr15:49478400-49497400	Weak transcription	Primary B cells from cord blood	blood
15	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:49480200-49494200	Weak transcription	Fetal Intestine Small	intestine
17	chr15:49480200-49494400	Weak transcription	Lung	lung
18	chr15:49480200-49500200	Weak transcription	Spleen	Spleen
19	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
20	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
21	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:49481600-49498600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:49482200-49494000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:49483200-49494200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:49483600-49497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr15:49484000-49494000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:49484400-49494200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:49484400-49497000	Weak transcription	Fetal Brain Male	brain
30	chr15:49485200-49494200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:49487000-49510600	Weak transcription	Thymus	Thymus
32	chr15:49487200-49494600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:49487200-49531200	Weak transcription	HMEC	breast
34	chr15:49488600-49494000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:49488800-49494400	Weak transcription	Fetal Intestine Large	intestine
36	chr15:49488800-49496200	Weak transcription	Colon Smooth Muscle	Colon
37	chr15:49489200-49508000	Weak transcription	Gastric	stomach
38	chr15:49489400-49496800	Weak transcription	HepG2	liver
39	chr15:49489400-49508200	Weak transcription	Pancreas	Pancrea
40	chr15:49489800-49499000	Weak transcription	Dnd41	blood
41	chr15:49490000-49499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr15:49490800-49508400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:49491000-49495600	Weak transcription	HUVEC	blood vessel
44	chr15:49491400-49496000	Weak transcription	Left Ventricle	heart
45	chr15:49491400-49498000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr15:49491400-49510600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:49491600-49494600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr15:49491600-49496600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:49491800-49494200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr15:49491800-49494600	Weak transcription	Fetal Heart	heart

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