Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12591134	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12591799	0.86[ASN][1000 genomes]
rs12591875	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592177	0.86[ASN][1000 genomes]
rs12592296	0.86[ASN][1000 genomes]
rs12593119	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12594154	0.86[ASN][1000 genomes]
rs12594827	0.86[ASN][1000 genomes]
rs1961692	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244224	1.00[EUR][1000 genomes]
rs2413945	0.83[AFR][1000 genomes]
rs2439132	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2457227	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663091	1.00[EUR][1000 genomes]
rs28871982	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4775801	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56107345	0.81[ASN][1000 genomes]
rs58053013	0.91[AFR][1000 genomes]
rs7176697	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73392212	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8034734	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv442375	chr15:49652524-49684082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49670800-49675400	Weak transcription	NHLF	lung
2	chr15:49673400-49675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:49673400-49675400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:49673400-49676000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:49673400-49676200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:49673600-49675400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:49673600-49676000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:49673600-49676200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:49673800-49683400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:49674000-49675000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:49674400-49677400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:49674600-49676400	Enhancers	Hela-S3	cervix
13	chr15:49674800-49675200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:49674800-49675200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr15:49674800-49675200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:49674800-49675400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:49674800-49675800	Weak transcription	Primary hematopoietic stem cells	blood

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