Variant report

Variant	rs2663091
Chromosome Location	chr15:49442616-49442617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49439437..49443597-chr15:49460944..49463407,4	MCF-7	breast:
2	chr15:49438116..49443617-chr15:49443933..49448726,7	K562	blood:
3	chr15:49409539..49411389-chr15:49441274..49443184,2	MCF-7	breast:
4	chr15:49441992..49444752-chr15:49461012..49463656,2	K562	blood:

Variant related genes	Relation type
ENSG00000166200	Chromatin interaction
ENSG00000259467	Chromatin interaction
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11070685	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs12438777	0.81[YRI][hapmap]
rs12591134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12591875	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12594448	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12915792	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs1961692	1.00[EUR][1000 genomes]
rs2244224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413925	1.00[JPT][hapmap]
rs2439132	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2457227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28871982	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899428	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899431	0.84[YRI][hapmap]
rs3105858	0.81[YRI][hapmap]
rs3105866	0.81[YRI][hapmap]
rs4775801	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs489813	0.81[YRI][hapmap]
rs56107345	0.92[ASN][1000 genomes]
rs56875838	1.00[EUR][1000 genomes]
rs577614	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs604765	0.81[YRI][hapmap]
rs6493351	0.86[AFR][1000 genomes]
rs6493356	0.82[YRI][hapmap]
rs7176697	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177959	0.93[YRI][hapmap]
rs7178112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73392212	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73406202	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8026829	0.83[YRI][hapmap]
rs8030581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8034734	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8040116	0.93[YRI][hapmap]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
2	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
4	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
6	chr15:49433800-49446600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:49435200-49445800	Weak transcription	Fetal Heart	heart
8	chr15:49435600-49446600	Weak transcription	Right Ventricle	heart
9	chr15:49435800-49442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:49435800-49442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:49435800-49443000	Weak transcription	Colonic Mucosa	Colon
12	chr15:49435800-49443000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:49435800-49445400	Weak transcription	Brain Germinal Matrix	brain
14	chr15:49435800-49445600	Weak transcription	Fetal Brain Male	brain
15	chr15:49435800-49445600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:49435800-49446000	Weak transcription	Fetal Kidney	kidney
17	chr15:49435800-49446000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:49435800-49446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:49435800-49446600	Weak transcription	HSMMtube	muscle
20	chr15:49435800-49446800	Weak transcription	Aorta	Aorta
21	chr15:49435800-49446800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr15:49436000-49444800	Weak transcription	Lung	lung
23	chr15:49436000-49445200	Weak transcription	Thymus	Thymus
24	chr15:49436000-49446000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:49436000-49446600	Weak transcription	Fetal Stomach	stomach
26	chr15:49436000-49446600	Weak transcription	Fetal Thymus	thymus
27	chr15:49436000-49446800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:49436000-49446800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:49436000-49447000	Weak transcription	Gastric	stomach
30	chr15:49436000-49447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:49436200-49446600	Weak transcription	Fetal Lung	lung
32	chr15:49436200-49446600	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:49436200-49447000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:49436400-49447000	Weak transcription	Left Ventricle	heart
35	chr15:49437000-49444600	Weak transcription	Dnd41	blood
36	chr15:49437000-49446600	Weak transcription	Fetal Brain Female	brain
37	chr15:49437200-49445200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:49437200-49445800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:49437200-49445800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:49437200-49445800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:49437200-49446000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:49437200-49446000	Weak transcription	Fetal Intestine Large	intestine
43	chr15:49437200-49446800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr15:49437400-49445000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:49437400-49446000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:49437400-49446800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:49437400-49446800	Weak transcription	Placenta	Placenta
48	chr15:49438200-49442800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:49438200-49444600	Weak transcription	NH-A	brain
50	chr15:49438200-49445200	Weak transcription	NHLF	lung

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