Variant report

Variant	rs2413925
Chromosome Location	chr15:49335609-49335610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49335254..49337373-chr15:49461305..49463777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264210	Chromatin interaction
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11639337	0.93[ASN][1000 genomes]
rs12592378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592504	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592869	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593119	1.00[JPT][hapmap]
rs12594448	1.00[JPT][hapmap]
rs12594562	1.00[JPT][hapmap]
rs16961982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961987	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961988	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2244224	1.00[JPT][hapmap]
rs2413924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663091	1.00[JPT][hapmap]
rs28876496	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2899428	1.00[JPT][hapmap]
rs4775798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4775801	1.00[JPT][hapmap]
rs56842065	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56918291	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59630062	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60310241	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7180646	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030581	1.00[JPT][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:49321000-49336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:49321400-49338000	Weak transcription	Spleen	Spleen
8	chr15:49321800-49336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:49321800-49336800	Weak transcription	Thymus	Thymus
10	chr15:49322000-49336400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:49327800-49336200	Weak transcription	Fetal Brain Female	brain
12	chr15:49327800-49337200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:49328200-49336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:49328200-49336400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:49328400-49336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:49328400-49336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:49328400-49336200	Weak transcription	Fetal Brain Male	brain
18	chr15:49328400-49336600	Weak transcription	Aorta	Aorta
19	chr15:49328400-49336600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:49328400-49338000	Weak transcription	Esophagus	oesophagus
21	chr15:49328600-49336200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:49328600-49336200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:49328600-49336400	Weak transcription	HUVEC	blood vessel
24	chr15:49328600-49337400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:49328600-49337400	Weak transcription	Colonic Mucosa	Colon
26	chr15:49328600-49337400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:49328600-49338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:49328600-49338000	Weak transcription	Gastric	stomach
29	chr15:49329200-49335800	Weak transcription	Adipose Nuclei	Adipose
30	chr15:49329200-49336200	Weak transcription	Fetal Intestine Large	intestine
31	chr15:49329200-49336400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr15:49329200-49336600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:49329200-49336600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:49329200-49337400	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:49329200-49337400	Weak transcription	Fetal Thymus	thymus
36	chr15:49329400-49335800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:49329400-49335800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:49329400-49336400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:49329400-49336600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr15:49329800-49336200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:49330000-49335800	Weak transcription	Primary T cells from cord blood	blood
42	chr15:49330000-49335800	Weak transcription	Brain Germinal Matrix	brain
43	chr15:49330000-49336200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:49330000-49336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:49330000-49336400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr15:49330000-49336400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:49330000-49336400	Weak transcription	K562	blood
48	chr15:49330000-49336400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr15:49330000-49336600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr15:49330200-49335800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links