Variant report

Variant	rs8030581
Chromosome Location	chr15:49392909-49392910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11070685	0.87[YRI][hapmap]
rs12591134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs12591875	1.00[EUR][1000 genomes]
rs12593119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12594448	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12915792	0.83[YRI][hapmap]
rs2244224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2413925	1.00[JPT][hapmap]
rs2413932	0.83[AFR][1000 genomes]
rs2439132	1.00[EUR][1000 genomes]
rs2457227	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2899428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4775801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs577614	0.86[YRI][hapmap]
rs7176697	1.00[EUR][1000 genomes]
rs7177959	0.86[YRI][hapmap]
rs7178112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392212	1.00[EUR][1000 genomes]
rs73406202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026829	0.83[YRI][hapmap];0.84[AFR][1000 genomes]
rs8034734	1.00[EUR][1000 genomes]
rs8040116	0.87[YRI][hapmap]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:49376600-49397600	Weak transcription	NHLF	lung
4	chr15:49378800-49396800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:49381400-49397400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:49381400-49402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:49381600-49398000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:49381800-49395600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:49382400-49393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:49382600-49402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:49385600-49403200	Weak transcription	Placenta	Placenta
12	chr15:49386400-49395200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:49386400-49403400	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:49386400-49404200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:49386800-49402600	Weak transcription	Gastric	stomach
16	chr15:49387000-49397400	Weak transcription	Primary T cells from cord blood	blood
17	chr15:49387200-49397600	Weak transcription	HSMMtube	muscle
18	chr15:49387200-49397800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:49387200-49402400	Weak transcription	Spleen	Spleen
20	chr15:49387200-49403000	Weak transcription	Dnd41	blood
21	chr15:49387400-49404200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:49388800-49395800	Weak transcription	Liver	Liver
23	chr15:49388800-49396800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:49388800-49396800	Weak transcription	Fetal Intestine Large	intestine
25	chr15:49388800-49397400	Weak transcription	K562	blood
26	chr15:49388800-49402400	Weak transcription	Fetal Intestine Small	intestine
27	chr15:49388800-49402400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:49388800-49402600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:49388800-49402600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:49388800-49402600	Weak transcription	Left Ventricle	heart
31	chr15:49388800-49402600	Weak transcription	Ovary	ovary
32	chr15:49388800-49402600	Weak transcription	Pancreas	Pancrea
33	chr15:49388800-49402600	Weak transcription	Thymus	Thymus
34	chr15:49388800-49402800	Weak transcription	Lung	lung
35	chr15:49388800-49404400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr15:49388800-49404600	Weak transcription	Hela-S3	cervix
37	chr15:49388800-49418800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:49388800-49434800	Weak transcription	Small Intestine	intestine
39	chr15:49389600-49396000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:49389600-49404400	Weak transcription	HepG2	liver
41	chr15:49390000-49393000	Weak transcription	A549	lung
42	chr15:49390200-49393400	Weak transcription	HUVEC	blood vessel
43	chr15:49390400-49403000	Weak transcription	Aorta	Aorta
44	chr15:49390800-49393000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:49390800-49393600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:49390800-49403000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:49391000-49393000	Weak transcription	Osteobl	bone
48	chr15:49391200-49398000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:49391200-49402400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:49391400-49393000	Weak transcription	Primary B cells from peripheral blood	blood

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