Variant report

Variant	rs577614
Chromosome Location	chr15:49445224-49445225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr15:49445189-49445602	K562	blood:	n/a	n/a
2	FOS	chr15:49445150-49445270	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr15:49445147-49445284	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:49443824..49452367-chr15:49460648..49465189,20	K562	blood:
2	chr15:49444143..49446024-chr15:49446403..49449314,2	K562	blood:
3	chr15:49443895..49446170-chr15:49446201..49449233,4	MCF-7	breast:

Variant related genes	Relation type
NDUFAF4P1	TF binding region
GALK2	TF binding region
ENSG00000259467	Chromatin interaction
ENSG00000264210	Chromatin interaction
ENSG00000166200	Chromatin interaction
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11070685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11070687	0.87[YRI][hapmap]
rs11633810	0.89[YRI][hapmap]
rs11854667	0.82[YRI][hapmap]
rs12232354	0.90[CHB][hapmap]
rs12438777	0.90[YRI][hapmap]
rs12441806	0.83[ASN][1000 genomes]
rs12591134	0.89[YRI][hapmap]
rs12898461	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs12898877	0.82[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs12909779	0.84[YRI][hapmap]
rs12910584	0.90[CHB][hapmap]
rs12915792	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916078	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[EUR][1000 genomes]
rs1816293	0.86[YRI][hapmap]
rs1864299	0.86[YRI][hapmap]
rs1981995	0.86[YRI][hapmap]
rs2163095	0.84[YRI][hapmap]
rs2163096	0.82[YRI][hapmap]
rs2244224	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs2247517	0.87[YRI][hapmap]
rs2457227	0.91[AFR][1000 genomes]
rs2663091	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs2899428	0.92[YRI][hapmap]
rs2899431	0.86[YRI][hapmap]
rs3098613	0.89[YRI][hapmap]
rs3098619	0.85[YRI][hapmap]
rs3098621	0.87[YRI][hapmap]
rs3105858	0.90[YRI][hapmap]
rs3105864	0.89[YRI][hapmap]
rs3105866	0.90[YRI][hapmap]
rs34505850	0.93[EUR][1000 genomes]
rs35274049	0.90[EUR][1000 genomes]
rs3907313	0.87[YRI][hapmap]
rs4421927	0.87[YRI][hapmap]
rs4774537	0.81[YRI][hapmap]
rs4775801	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs478500	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs481466	0.89[YRI][hapmap]
rs489813	0.90[YRI][hapmap]
rs604765	0.90[YRI][hapmap]
rs612803	0.86[YRI][hapmap]
rs626295	0.89[YRI][hapmap]
rs6493351	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493356	0.89[YRI][hapmap]
rs6493357	0.89[YRI][hapmap]
rs694882	0.80[AFR][1000 genomes]
rs71394957	0.89[EUR][1000 genomes]
rs71467666	0.90[EUR][1000 genomes]
rs71467668	0.90[EUR][1000 genomes]
rs7162360	0.86[YRI][hapmap]
rs7166491	0.81[EUR][1000 genomes]
rs7166847	0.87[YRI][hapmap]
rs7176697	0.93[YRI][hapmap]
rs7177959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7179127	0.86[YRI][hapmap]
rs7179237	0.83[YRI][hapmap]
rs8024102	0.86[YRI][hapmap]
rs8026364	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8029538	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs8030581	0.86[YRI][hapmap]
rs8031480	0.89[YRI][hapmap]
rs8036293	0.90[EUR][1000 genomes]
rs8039920	0.81[YRI][hapmap]
rs8040116	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8040134	0.89[YRI][hapmap]
rs919447	0.86[YRI][hapmap]
rs9806362	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
2	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
4	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
6	chr15:49433800-49446600	Weak transcription	Fetal Intestine Small	intestine
7	chr15:49435200-49445800	Weak transcription	Fetal Heart	heart
8	chr15:49435600-49446600	Weak transcription	Right Ventricle	heart
9	chr15:49435800-49445400	Weak transcription	Brain Germinal Matrix	brain
10	chr15:49435800-49445600	Weak transcription	Fetal Brain Male	brain
11	chr15:49435800-49445600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:49435800-49446000	Weak transcription	Fetal Kidney	kidney
13	chr15:49435800-49446000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:49435800-49446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:49435800-49446600	Weak transcription	HSMMtube	muscle
16	chr15:49435800-49446800	Weak transcription	Aorta	Aorta
17	chr15:49435800-49446800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:49436000-49446000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:49436000-49446600	Weak transcription	Fetal Stomach	stomach
20	chr15:49436000-49446600	Weak transcription	Fetal Thymus	thymus
21	chr15:49436000-49446800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:49436000-49446800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:49436000-49447000	Weak transcription	Gastric	stomach
24	chr15:49436000-49447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:49436200-49446600	Weak transcription	Fetal Lung	lung
26	chr15:49436200-49446600	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:49436200-49447000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:49436400-49447000	Weak transcription	Left Ventricle	heart
29	chr15:49437000-49446600	Weak transcription	Fetal Brain Female	brain
30	chr15:49437200-49445800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:49437200-49445800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:49437200-49445800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:49437200-49446000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:49437200-49446000	Weak transcription	Fetal Intestine Large	intestine
35	chr15:49437200-49446800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr15:49437400-49446000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:49437400-49446800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:49437400-49446800	Weak transcription	Placenta	Placenta
39	chr15:49438800-49446200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:49439200-49445800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr15:49439200-49446600	Weak transcription	Psoas Muscle	Psoas
42	chr15:49440400-49445600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr15:49440800-49445600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:49440800-49446400	Weak transcription	Right Atrium	heart
45	chr15:49441000-49445600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:49441000-49446600	Weak transcription	Ovary	ovary
47	chr15:49441000-49446800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:49441000-49447000	Weak transcription	Small Intestine	intestine
49	chr15:49441200-49445800	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:49441600-49445600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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