Variant report

Variant	rs11633810
Chromosome Location	chr15:49416746-49416747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49414952..49417698-chr15:49422729..49425461,2	K562	blood:
2	chr15:49414600..49417536-chr15:49446435..49449033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000166200	Chromatin interaction
ENSG00000259467	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1048975	0.85[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10775139	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs11070682	0.85[CHB][hapmap]
rs11070683	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11070685	0.86[YRI][hapmap]
rs11070687	0.81[AMR][1000 genomes]
rs11630937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632386	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11858114	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12148348	0.87[ASN][1000 genomes]
rs12437486	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12438777	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12899761	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12909779	0.80[AMR][1000 genomes]
rs12915792	0.83[YRI][hapmap]
rs16962057	0.80[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16962111	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1864299	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1981995	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes]
rs2086256	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2127241	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2127242	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2163095	0.80[AMR][1000 genomes]
rs2163096	0.80[AMR][1000 genomes]
rs2219812	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2244224	0.80[YRI][hapmap]
rs2247003	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2247517	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2263559	0.83[EUR][1000 genomes]
rs2264508	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2289390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413935	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2413941	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2439133	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2457228	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2457229	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2580926	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2663088	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2663089	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28566064	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28653543	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28731311	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2899427	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2899428	0.80[YRI][hapmap]
rs2899430	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2899431	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2940746	0.83[EUR][1000 genomes]
rs3098613	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3098619	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3098620	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs3098621	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3105858	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3105861	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs3105864	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3105866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3907313	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4393519	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4421927	0.80[AMR][1000 genomes]
rs4508377	0.80[AMR][1000 genomes]
rs4774537	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775801	0.82[YRI][hapmap]
rs481466	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs489813	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs507054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520495	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55736202	0.82[EUR][1000 genomes]
rs568726	0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs577614	0.89[YRI][hapmap]
rs58851861	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs600863	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs603868	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs604765	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs609434	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs612803	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs619045	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62009779	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs626295	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs626855	0.85[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs633333	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs647118	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs6493356	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493357	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6493359	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6493362	0.81[AMR][1000 genomes]
rs66499252	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs672777	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs679957	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs685172	0.85[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs694882	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7162602	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7166847	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7168201	0.95[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes]
rs7169443	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7176697	0.80[YRI][hapmap]
rs7177959	0.86[YRI][hapmap]
rs7179127	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7179237	0.80[AMR][1000 genomes]
rs7179301	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs754165	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs754166	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs8024102	0.81[AMR][1000 genomes]
rs8025952	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs8039512	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8039920	0.80[AMR][1000 genomes]
rs8040075	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs8040116	0.86[YRI][hapmap]
rs8041461	0.81[AMR][1000 genomes]
rs8182081	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs919447	0.81[AMR][1000 genomes]
rs9806208	0.80[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11633810	COPS2	Cis_1M	lymphoblastoid	RTeQTL
rs11633810	LCMT2	cis	parietal	SCAN
rs11633810	SPATA5L1	cis	parietal	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49388800-49418800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:49388800-49434800	Weak transcription	Small Intestine	intestine
3	chr15:49395400-49419000	Weak transcription	Fetal Kidney	kidney
4	chr15:49395600-49426400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:49396000-49419600	Weak transcription	NHEK	skin
6	chr15:49396400-49418800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:49398600-49427600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:49403000-49417200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:49403000-49434600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:49403200-49423400	Weak transcription	Psoas Muscle	Psoas
11	chr15:49403400-49419600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
13	chr15:49403600-49423600	Weak transcription	Esophagus	oesophagus
14	chr15:49403600-49432200	Weak transcription	Fetal Stomach	stomach
15	chr15:49403600-49435200	Weak transcription	Aorta	Aorta
16	chr15:49403600-49435200	Weak transcription	Gastric	stomach
17	chr15:49403600-49435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:49403800-49417400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:49403800-49419400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:49403800-49433200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:49404000-49419800	Weak transcription	NHLF	lung
22	chr15:49404400-49419800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:49404600-49424000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:49404800-49417200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:49404800-49417600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr15:49404800-49419000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:49404800-49419000	Weak transcription	Primary T cells from cord blood	blood
28	chr15:49404800-49419000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:49404800-49419200	Weak transcription	Brain Angular Gyrus	brain
30	chr15:49404800-49419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:49404800-49419400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:49404800-49419400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:49404800-49419600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:49404800-49419600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:49404800-49419600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:49404800-49419600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr15:49404800-49419600	Weak transcription	Ovary	ovary
38	chr15:49404800-49419600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:49404800-49419800	Weak transcription	Left Ventricle	heart
40	chr15:49404800-49419800	Weak transcription	Thymus	Thymus
41	chr15:49404800-49423400	Weak transcription	HepG2	liver
42	chr15:49404800-49425600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr15:49404800-49434600	Weak transcription	Right Ventricle	heart
44	chr15:49404800-49435000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr15:49405000-49416800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:49405000-49417000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:49405000-49417400	Weak transcription	Adipose Nuclei	Adipose
48	chr15:49405000-49417400	Weak transcription	Placenta	Placenta
49	chr15:49405000-49417400	Weak transcription	K562	blood
50	chr15:49405000-49418600	Weak transcription	Fetal Thymus	thymus

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