Variant report

Variant	rs8182081
Chromosome Location	chr15:49474275-49474276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49446271..49448086-chr15:49474263..49476987,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000166200	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10467993	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1048975	0.83[EUR][1000 genomes]
rs11070687	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11630937	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632386	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11633810	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11852825	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11854667	0.81[EUR][1000 genomes]
rs12437486	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12438777	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12899761	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12902497	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12903238	0.81[EUR][1000 genomes]
rs12903904	0.81[EUR][1000 genomes]
rs12904171	0.86[ASN][1000 genomes]
rs12909779	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12916840	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1594188	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs16962111	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1816293	0.82[EUR][1000 genomes]
rs1864299	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1904313	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1981995	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2043036	0.81[EUR][1000 genomes]
rs2099141	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2163095	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2163096	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2247003	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2247517	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2263559	0.86[EUR][1000 genomes]
rs2264508	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289390	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2413935	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2413941	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2439133	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2457228	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2457229	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2663089	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28374976	0.81[EUR][1000 genomes]
rs28566064	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28653543	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28687437	0.81[EUR][1000 genomes]
rs28731311	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2899431	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2940746	0.86[EUR][1000 genomes]
rs3098613	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098619	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098621	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3105858	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3105864	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3105866	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3907313	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4393519	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4421927	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4508377	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4774537	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4775810	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs481466	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs489813	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs507054	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs520495	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55736202	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs568726	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58851861	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs603868	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs604765	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs609434	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612803	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619045	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62009779	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs626295	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs626855	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs633333	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493356	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493357	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493359	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6493362	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66499252	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs672777	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs685172	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs694882	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7162360	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7162602	0.81[ASN][1000 genomes]
rs7166847	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7168201	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7169443	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179127	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7179237	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8024102	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8025237	0.81[AFR][1000 genomes]
rs8031480	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8034956	0.81[EUR][1000 genomes]
rs8035266	0.82[EUR][1000 genomes]
rs8039512	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8039920	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8040134	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs8041461	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs919447	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9806208	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9806776	0.80[EUR][1000 genomes]
rs981612	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8182081	COPS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463000-49479600	Weak transcription	Left Ventricle	heart
2	chr15:49463200-49479600	Weak transcription	Right Ventricle	heart
3	chr15:49463200-49479800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:49463200-49508200	Weak transcription	Ovary	ovary
5	chr15:49463400-49480000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:49463600-49474400	Weak transcription	Primary B cells from cord blood	blood
7	chr15:49463600-49477200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:49463600-49479400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:49463600-49479600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:49463600-49494400	Weak transcription	Fetal Thymus	thymus
11	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:49463600-49527800	Weak transcription	HSMM	muscle
13	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
14	chr15:49463800-49479200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:49463800-49479400	Weak transcription	Osteobl	bone
16	chr15:49464000-49474400	Weak transcription	NHDF-Ad	bronchial
17	chr15:49464000-49482800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:49464000-49491600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:49464200-49477400	Weak transcription	Fetal Intestine Large	intestine
20	chr15:49464200-49479200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:49464200-49479400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:49464200-49481800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:49464400-49493800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:49464400-49493800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:49464400-49500000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:49464800-49477400	Weak transcription	Primary T cells from cord blood	blood
27	chr15:49464800-49479600	Weak transcription	NHLF	lung
28	chr15:49464800-49481800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:49465200-49494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:49465400-49477400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr15:49465400-49479600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
33	chr15:49466800-49482800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:49467600-49479400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:49467600-49494200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:49467800-49479600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:49468000-49479400	Weak transcription	Stomach Mucosa	stomach
38	chr15:49468400-49494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:49468600-49476000	Weak transcription	A549	lung
40	chr15:49468600-49479600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:49470000-49476600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:49470200-49480000	Weak transcription	Fetal Intestine Small	intestine
43	chr15:49471000-49475400	Weak transcription	Gastric	stomach
44	chr15:49471000-49476400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:49472800-49497200	Weak transcription	Brain Anterior Caudate	brain
46	chr15:49473000-49481600	Weak transcription	K562	blood
47	chr15:49473000-49483400	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:49473600-49479800	Weak transcription	Lung	lung
49	chr15:49473600-49483200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:49474200-49474800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links