Variant report

Variant	rs12915792
Chromosome Location	chr15:49438326-49438327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:49153876..49154623-chr15:49437940..49438792,2	MCF-7	breast:
2	chr15:49429242..49431810-chr15:49437695..49440967,3	K562	blood:
3	chr15:49410175..49412342-chr15:49437300..49438886,2	K562	blood:
4	chr15:49432624..49435848-chr15:49436150..49438690,3	K562	blood:
5	chr15:49337063..49339698-chr15:49438112..49439651,2	MCF-7	breast:
6	chr15:49438116..49443617-chr15:49443933..49448726,7	K562	blood:
7	chr15:49322333..49324034-chr15:49436776..49439133,2	K562	blood:
8	chr15:49438066..49440274-chr15:49455575..49457158,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000138593	Chromatin interaction
ENSG00000200120	Chromatin interaction
ENSG00000259467	Chromatin interaction
ENSG00000166200	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11070685	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11633810	0.83[YRI][hapmap]
rs12438777	0.83[YRI][hapmap]
rs12441806	0.83[ASN][1000 genomes]
rs12591134	0.85[YRI][hapmap]
rs12898461	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12898877	0.89[CEU][hapmap];0.93[TSI][hapmap]
rs12916078	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2244224	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs2457227	0.87[AFR][1000 genomes]
rs2663091	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs2899428	0.93[ASW][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs3098613	0.80[LWK][hapmap];0.83[YRI][hapmap]
rs3105858	0.83[YRI][hapmap]
rs3105864	0.83[YRI][hapmap]
rs3105866	0.83[YRI][hapmap]
rs34505850	0.97[EUR][1000 genomes]
rs35274049	0.87[EUR][1000 genomes]
rs4775801	0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs478500	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs481466	0.83[YRI][hapmap]
rs489813	0.83[YRI][hapmap]
rs577614	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs604765	0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs626295	0.83[YRI][hapmap]
rs6493351	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493356	0.84[YRI][hapmap]
rs6493357	0.81[YRI][hapmap]
rs71394957	0.92[EUR][1000 genomes]
rs71467666	0.87[EUR][1000 genomes]
rs71467668	0.87[EUR][1000 genomes]
rs7176697	0.89[YRI][hapmap]
rs7177959	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8026364	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8029538	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8030581	0.83[YRI][hapmap]
rs8031480	0.83[YRI][hapmap]
rs8036293	0.87[EUR][1000 genomes]
rs8040116	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8040134	0.83[YRI][hapmap]
rs9806362	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49403400-49440200	Weak transcription	Pancreas	Pancrea
2	chr15:49405600-49441800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:49413600-49447000	Weak transcription	Stomach Mucosa	stomach
4	chr15:49419000-49445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:49420200-49447000	Weak transcription	Spleen	Spleen
6	chr15:49420400-49447000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:49429200-49447000	Weak transcription	Esophagus	oesophagus
8	chr15:49431000-49438600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:49433800-49446600	Weak transcription	Fetal Intestine Small	intestine
10	chr15:49434800-49438800	Weak transcription	Psoas Muscle	Psoas
11	chr15:49435200-49445800	Weak transcription	Fetal Heart	heart
12	chr15:49435600-49446600	Weak transcription	Right Ventricle	heart
13	chr15:49435800-49438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr15:49435800-49438400	Weak transcription	Brain Substantia Nigra	brain
15	chr15:49435800-49438400	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:49435800-49438600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:49435800-49438600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:49435800-49438600	Weak transcription	Small Intestine	intestine
19	chr15:49435800-49440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:49435800-49440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:49435800-49440400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:49435800-49440600	Weak transcription	Brain Anterior Caudate	brain
23	chr15:49435800-49440600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:49435800-49440800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:49435800-49442800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:49435800-49442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:49435800-49443000	Weak transcription	Colonic Mucosa	Colon
28	chr15:49435800-49443000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:49435800-49445400	Weak transcription	Brain Germinal Matrix	brain
30	chr15:49435800-49445600	Weak transcription	Fetal Brain Male	brain
31	chr15:49435800-49445600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:49435800-49446000	Weak transcription	Fetal Kidney	kidney
33	chr15:49435800-49446000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:49435800-49446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:49435800-49446600	Weak transcription	HSMMtube	muscle
36	chr15:49435800-49446800	Weak transcription	Aorta	Aorta
37	chr15:49435800-49446800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:49436000-49438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:49436000-49438400	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:49436000-49438600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:49436000-49438600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:49436000-49438600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr15:49436000-49438800	Weak transcription	Ovary	ovary
44	chr15:49436000-49439600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:49436000-49439600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:49436000-49440000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:49436000-49440400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:49436000-49440600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:49436000-49444800	Weak transcription	Lung	lung
50	chr15:49436000-49445200	Weak transcription	Thymus	Thymus

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