Variant report

Variant	rs8026364
Chromosome Location	chr15:49641724-49641725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49635452..49638613-chr15:49638913..49642662,3	K562	blood:
2	chr15:49639583..49641863-chr15:49642641..49645261,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11070685	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12591875	0.86[AFR][1000 genomes]
rs12708418	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898461	0.87[EUR][1000 genomes]
rs12898877	0.95[EUR][1000 genomes]
rs12903992	0.81[EUR][1000 genomes]
rs12914592	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12915792	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12916078	0.87[EUR][1000 genomes]
rs13379615	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13380075	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1583060	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16962418	0.83[EUR][1000 genomes]
rs16962419	0.83[EUR][1000 genomes]
rs28871982	0.86[AFR][1000 genomes]
rs34148901	0.83[EUR][1000 genomes]
rs34505850	0.83[EUR][1000 genomes]
rs35001785	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35274049	0.86[EUR][1000 genomes]
rs478500	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs577614	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6493351	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71467666	0.86[EUR][1000 genomes]
rs71467668	0.86[EUR][1000 genomes]
rs71467676	0.83[EUR][1000 genomes]
rs7166491	0.95[EUR][1000 genomes]
rs7176697	0.83[AFR][1000 genomes]
rs7177959	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8029538	0.83[EUR][1000 genomes]
rs8034734	0.82[AFR][1000 genomes]
rs8036293	0.86[EUR][1000 genomes]
rs8040116	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9806362	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49613600-49643000	Weak transcription	Pancreas	Pancrea
2	chr15:49622600-49642600	Weak transcription	HSMM	muscle
3	chr15:49623200-49646000	Weak transcription	Left Ventricle	heart
4	chr15:49623400-49647600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:49632400-49643000	Weak transcription	Lung	lung
6	chr15:49636200-49645200	Weak transcription	HUVEC	blood vessel
7	chr15:49637600-49644000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:49638800-49642600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:49638800-49643000	Weak transcription	Aorta	Aorta

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