Variant report

Variant	rs12591134
Chromosome Location	chr15:49583125-49583126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10519227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11070685	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs11070687	0.81[YRI][hapmap]
rs12591799	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12591875	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12592296	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12593068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12593119	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12594448	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12594827	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12595497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12914592	0.81[YRI][hapmap]
rs12915792	0.85[YRI][hapmap]
rs12916840	0.81[YRI][hapmap]
rs16962436	0.86[YRI][hapmap]
rs17477923	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1816293	0.81[YRI][hapmap]
rs1961692	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2244224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2247517	0.81[YRI][hapmap]
rs2413943	0.85[YRI][hapmap]
rs2413944	0.85[YRI][hapmap]
rs2439132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2457227	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2663091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28871982	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs2899431	0.81[YRI][hapmap]
rs3098621	0.81[YRI][hapmap]
rs3809495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3907313	0.81[YRI][hapmap]
rs4332689	0.86[YRI][hapmap]
rs4338740	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4421927	0.81[YRI][hapmap]
rs4775801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478500	0.82[AFR][1000 genomes]
rs56107345	0.96[ASN][1000 genomes]
rs56875838	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs577614	0.89[YRI][hapmap]
rs60144931	0.80[AFR][1000 genomes]
rs6493366	0.93[YRI][hapmap]
rs6493367	0.93[YRI][hapmap]
rs7162373	0.85[YRI][hapmap]
rs7166847	0.81[YRI][hapmap]
rs7168316	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7176697	1.00[CHB][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7177959	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs7178112	1.00[EUR][1000 genomes]
rs73392212	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73406202	1.00[EUR][1000 genomes]
rs8026829	0.80[YRI][hapmap]
rs8030581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs8034734	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040116	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs9806362	0.85[AFR][1000 genomes]
rs981612	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
2	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:49557200-49611800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:49557800-49607600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:49558000-49624400	Weak transcription	Esophagus	oesophagus
6	chr15:49558200-49611800	Weak transcription	Colonic Mucosa	Colon
7	chr15:49561000-49600800	Weak transcription	Pancreas	Pancrea
8	chr15:49562000-49595800	Weak transcription	HepG2	liver
9	chr15:49562200-49626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:49563600-49611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr15:49563800-49583200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:49564000-49586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:49564000-49593600	Weak transcription	HMEC	breast
14	chr15:49564200-49593600	Weak transcription	Lung	lung
15	chr15:49565400-49583600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:49565400-49602000	Weak transcription	Fetal Heart	heart
17	chr15:49565600-49583200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:49565800-49585200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:49566000-49585200	Weak transcription	GM12878-XiMat	blood
20	chr15:49566000-49586200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:49566200-49611800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:49566400-49595600	Weak transcription	Gastric	stomach
23	chr15:49566600-49623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:49572000-49583600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:49572000-49595800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:49572800-49600800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:49573600-49613000	Weak transcription	Brain Germinal Matrix	brain
28	chr15:49573800-49588400	Weak transcription	Fetal Kidney	kidney
29	chr15:49573800-49622200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr15:49574000-49588400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:49574200-49589000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:49574600-49588800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:49575600-49586800	Weak transcription	NH-A	brain
34	chr15:49575600-49587000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:49576400-49593600	Weak transcription	Stomach Mucosa	stomach
36	chr15:49576600-49583200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:49576600-49589600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:49576600-49605600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:49576800-49583800	Weak transcription	NHDF-Ad	bronchial
40	chr15:49576800-49584600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:49576800-49585200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:49576800-49611800	Weak transcription	Thymus	Thymus
43	chr15:49577000-49605800	Weak transcription	A549	lung
44	chr15:49577200-49607000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:49577400-49585200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:49577600-49605400	Weak transcription	Fetal Intestine Small	intestine
47	chr15:49577800-49596600	Weak transcription	HSMM	muscle
48	chr15:49577800-49611600	Weak transcription	Fetal Brain Female	brain
49	chr15:49578000-49583600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:49578000-49583600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links