Variant report

Variant	rs60310241
Chromosome Location	chr15:49286188-49286189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11639337	0.85[ASN][1000 genomes]
rs12592378	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592504	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592869	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961982	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961984	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961987	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961988	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413924	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2413925	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28876496	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56842065	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56918291	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59630062	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177404	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7180646	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025570	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49279400-49288800	Strong transcription	HSMM	muscle
4	chr15:49280000-49287400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:49280000-49289000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
7	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:49280200-49289200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
11	chr15:49280600-49291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:49281200-49292800	Strong transcription	NHLF	lung
13	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr15:49281800-49293000	Strong transcription	Liver	Liver
18	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:49282200-49287400	Strong transcription	Primary T cells from cord blood	blood
21	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
25	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:49282400-49288600	Weak transcription	Psoas Muscle	Psoas
27	chr15:49282400-49289200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
29	chr15:49282600-49292200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:49282800-49287600	Strong transcription	Ovary	ovary
35	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:49282800-49333400	Weak transcription	A549	lung
38	chr15:49283000-49288000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:49283000-49288600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:49283200-49293000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:49283200-49293200	Strong transcription	Fetal Lung	lung
42	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr15:49283400-49289400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr15:49283400-49289400	Strong transcription	Lung	lung
45	chr15:49283400-49290000	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:49283400-49290000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:49283400-49292800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr15:49283400-49293000	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr15:49283400-49293200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:49283400-49293400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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