Variant report

Variant	rs8025570
Chromosome Location	chr15:49330250-49330251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49329265..49331063-chr15:49334180..49335955,2	K562	blood:
2	chr15:49318649..49320279-chr15:49329361..49332262,2	K562	blood:
3	chr15:49323112..49327106-chr15:49329823..49333093,3	K562	blood:
4	chr15:49328431..49332105-chr15:49337151..49339977,3	MCF-7	breast:
5	chr15:49327331..49331009-chr15:49336613..49340321,7	K562	blood:

Variant related genes	Relation type
ENSG00000265942	Chromatin interaction
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11639337	0.89[ASN][1000 genomes]
rs12592378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592504	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592869	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594562	1.00[JPT][hapmap]
rs16961982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961987	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961988	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28876496	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4775798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs56842065	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56918291	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59630062	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60310241	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7177404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
6	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
7	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:49321000-49336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:49321400-49338000	Weak transcription	Spleen	Spleen
13	chr15:49321800-49336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:49321800-49336800	Weak transcription	Thymus	Thymus
15	chr15:49322000-49336400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:49322600-49333600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:49327400-49331200	Enhancers	Stomach Mucosa	stomach
18	chr15:49327800-49330800	Enhancers	Brain Hippocampus Middle	brain
19	chr15:49327800-49336200	Weak transcription	Fetal Brain Female	brain
20	chr15:49327800-49337200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:49328000-49334600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:49328200-49330400	Genic enhancers	HSMM	muscle
23	chr15:49328200-49332000	Enhancers	Brain Substantia Nigra	brain
24	chr15:49328200-49336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr15:49328200-49336400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:49328400-49332000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr15:49328400-49332600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:49328400-49334600	Weak transcription	Right Atrium	heart
29	chr15:49328400-49336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:49328400-49336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:49328400-49336200	Weak transcription	Fetal Brain Male	brain
32	chr15:49328400-49336600	Weak transcription	Aorta	Aorta
33	chr15:49328400-49336600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:49328400-49338000	Weak transcription	Esophagus	oesophagus
35	chr15:49328600-49333400	Weak transcription	GM12878-XiMat	blood
36	chr15:49328600-49333600	Weak transcription	Ovary	ovary
37	chr15:49328600-49334400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:49328600-49334400	Weak transcription	Left Ventricle	heart
39	chr15:49328600-49334400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr15:49328600-49334600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr15:49328600-49334600	Weak transcription	Fetal Stomach	stomach
42	chr15:49328600-49334600	Weak transcription	Lung	lung
43	chr15:49328600-49336200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:49328600-49336200	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:49328600-49336400	Weak transcription	HUVEC	blood vessel
46	chr15:49328600-49337400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:49328600-49337400	Weak transcription	Colonic Mucosa	Colon
48	chr15:49328600-49337400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr15:49328600-49338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:49328600-49338000	Weak transcription	Gastric	stomach

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