Variant report

Variant	rs4775798
Chromosome Location	chr15:49329436-49329437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11639337	0.89[ASN][1000 genomes]
rs12592378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592504	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592869	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594562	1.00[JPT][hapmap]
rs16961982	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961984	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961987	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961988	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28876496	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2899428	0.91[CHD][hapmap]
rs56842065	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56918291	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59630062	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60310241	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7177404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180646	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
8	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
9	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:49315200-49330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:49317200-49329600	Strong transcription	Placenta	Placenta
12	chr15:49317800-49330200	Strong transcription	Primary B cells from cord blood	blood
13	chr15:49318200-49330000	Strong transcription	Primary T cells from cord blood	blood
14	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:49319400-49329600	Weak transcription	Brain Germinal Matrix	brain
16	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:49320800-49329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:49321000-49336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:49321200-49329800	Weak transcription	Fetal Heart	heart
21	chr15:49321400-49338000	Weak transcription	Spleen	Spleen
22	chr15:49321800-49336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:49321800-49336800	Weak transcription	Thymus	Thymus
24	chr15:49322000-49336400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:49322600-49333600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:49323000-49329800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:49325800-49330000	Strong transcription	Fetal Lung	lung
28	chr15:49326600-49329800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr15:49326800-49330000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr15:49327000-49329800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:49327400-49329800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr15:49327400-49330000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:49327400-49331200	Enhancers	Stomach Mucosa	stomach
34	chr15:49327600-49330000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr15:49327600-49330000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:49327600-49330000	Genic enhancers	Brain Angular Gyrus	brain
37	chr15:49327800-49330800	Enhancers	Brain Hippocampus Middle	brain
38	chr15:49327800-49336200	Weak transcription	Fetal Brain Female	brain
39	chr15:49327800-49337200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:49328000-49334600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:49328200-49330000	Enhancers	Small Intestine	intestine
42	chr15:49328200-49330200	Enhancers	HMEC	breast
43	chr15:49328200-49330400	Genic enhancers	HSMM	muscle
44	chr15:49328200-49332000	Enhancers	Brain Substantia Nigra	brain
45	chr15:49328200-49336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr15:49328200-49336400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:49328400-49329600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:49328400-49329600	Weak transcription	Hela-S3	cervix
49	chr15:49328400-49329800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:49328400-49330000	Enhancers	Fetal Intestine Small	intestine

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