Variant report

Variant	rs28876496
Chromosome Location	chr15:49312502-49312503
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:49312466-49312821	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SECISBP2L	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12592378	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592504	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592869	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16961982	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16961984	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16961987	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16961988	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2413924	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2413925	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56842065	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56918291	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59630062	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60310241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7177404	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7180646	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8025570	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
6	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:49298200-49314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:49298200-49314600	Strong transcription	Adipose Nuclei	Adipose
10	chr15:49298200-49316200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr15:49298200-49316400	Strong transcription	Placenta	Placenta
12	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:49298400-49314000	Strong transcription	HSMM	muscle
14	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:49301400-49329000	Weak transcription	K562	blood
19	chr15:49303000-49312800	Weak transcription	Lung	lung
20	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
21	chr15:49304200-49313200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:49304400-49312600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:49304400-49318000	Weak transcription	Brain Germinal Matrix	brain
25	chr15:49308400-49318200	Weak transcription	Fetal Brain Female	brain
26	chr15:49308400-49320000	Weak transcription	HepG2	liver
27	chr15:49308400-49320200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:49308400-49327600	Weak transcription	Dnd41	blood
30	chr15:49308600-49312600	Weak transcription	Aorta	Aorta
31	chr15:49308600-49312600	Weak transcription	Pancreas	Pancrea
32	chr15:49308600-49313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:49308600-49313400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:49308600-49318000	Weak transcription	Brain Angular Gyrus	brain
35	chr15:49308600-49319000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:49308600-49320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:49308600-49320600	Weak transcription	Fetal Heart	heart
38	chr15:49308600-49323000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
40	chr15:49308600-49327000	Weak transcription	Gastric	stomach
41	chr15:49308800-49312600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:49308800-49312800	Weak transcription	Ovary	ovary
43	chr15:49308800-49313400	Weak transcription	HSMMtube	muscle
44	chr15:49308800-49315600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:49308800-49320000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
47	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
48	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
50	chr15:49309200-49327600	Weak transcription	NHEK	skin

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