Variant report

Variant	rs16961982
Chromosome Location	chr15:49316810-49316811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49316228..49318590-chr15:49318966..49321819,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11639337	0.89[ASN][1000 genomes]
rs12592378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592869	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594562	1.00[JPT][hapmap]
rs16961984	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2413924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28876496	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2899428	0.91[CHD][hapmap]
rs4775798	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap]
rs56842065	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56918291	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59630062	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60310241	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7177404	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180646	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
6	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:49301400-49329000	Weak transcription	K562	blood
14	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
15	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:49304400-49318000	Weak transcription	Brain Germinal Matrix	brain
17	chr15:49308400-49318200	Weak transcription	Fetal Brain Female	brain
18	chr15:49308400-49320000	Weak transcription	HepG2	liver
19	chr15:49308400-49320200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:49308400-49327600	Weak transcription	Dnd41	blood
22	chr15:49308600-49318000	Weak transcription	Brain Angular Gyrus	brain
23	chr15:49308600-49319000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:49308600-49320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:49308600-49320600	Weak transcription	Fetal Heart	heart
26	chr15:49308600-49323000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
28	chr15:49308600-49327000	Weak transcription	Gastric	stomach
29	chr15:49308800-49320000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
31	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
32	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
34	chr15:49309200-49327600	Weak transcription	NHEK	skin
35	chr15:49309400-49317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:49309400-49318000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:49309400-49318200	Weak transcription	Fetal Brain Male	brain
38	chr15:49309400-49320000	Weak transcription	Colonic Mucosa	Colon
39	chr15:49309600-49318000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:49309600-49318000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:49309600-49319000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr15:49309600-49320200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:49309600-49321600	Weak transcription	HMEC	breast
44	chr15:49309800-49317600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:49309800-49319000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:49309800-49319800	Weak transcription	HUVEC	blood vessel
47	chr15:49310000-49317600	Weak transcription	NH-A	brain
48	chr15:49310000-49318000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:49310000-49319000	Weak transcription	NHLF	lung
50	chr15:49310000-49320200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links