Variant report

Variant	rs12592869
Chromosome Location	chr15:49289750-49289751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49287770..49290025-chr15:49461376..49464212,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11639337	0.85[ASN][1000 genomes]
rs12592378	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12592504	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961982	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961984	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961987	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16961988	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2413924	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2413925	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28876496	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56842065	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56918291	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59630062	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60310241	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177404	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7180646	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025570	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49277400-49299400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:49280000-49293400	Strong transcription	Adipose Nuclei	Adipose
4	chr15:49280000-49294200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:49280400-49293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:49280400-49294400	Strong transcription	Placenta	Placenta
7	chr15:49280600-49291200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:49281200-49292800	Strong transcription	NHLF	lung
9	chr15:49281600-49293200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:49281600-49293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:49281600-49293600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:49281600-49293800	Strong transcription	Primary hematopoietic stem cells	blood
13	chr15:49281800-49293000	Strong transcription	Liver	Liver
14	chr15:49282000-49293400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:49282000-49294000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:49282200-49293200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:49282200-49293400	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:49282200-49294800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:49282200-49294800	Strong transcription	Primary B cells from cord blood	blood
20	chr15:49282200-49294800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:49282400-49293200	Strong transcription	Fetal Intestine Large	intestine
22	chr15:49282600-49292200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:49282600-49293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:49282600-49293200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr15:49282600-49293200	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr15:49282600-49293400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:49282800-49293200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:49282800-49293400	Strong transcription	Fetal Muscle Leg	muscle
29	chr15:49282800-49333400	Weak transcription	A549	lung
30	chr15:49283200-49293000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:49283200-49293200	Strong transcription	Fetal Lung	lung
32	chr15:49283200-49294800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr15:49283400-49290000	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:49283400-49290000	Strong transcription	Stomach Smooth Muscle	stomach
35	chr15:49283400-49292800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr15:49283400-49293000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr15:49283400-49293200	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:49283400-49293400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:49283600-49293200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr15:49283800-49293400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr15:49284200-49292400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:49284400-49289800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:49284600-49293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:49285000-49290600	Weak transcription	Spleen	Spleen
46	chr15:49285000-49291000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:49285000-49291000	Weak transcription	Gastric	stomach
48	chr15:49285000-49291200	Weak transcription	Fetal Heart	heart
49	chr15:49285000-49291600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:49285000-49291800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links