Variant report

Variant	rs725815
Chromosome Location	chr15:49353218-49353219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49351455..49354090-chr15:49354572..49357346,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11070677	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs11070679	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11070681	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11632520	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11635777	0.82[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12441272	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12442006	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12915955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	0.86[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2305195	0.86[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];0.86[ASN][1000 genomes]
rs34825252	0.86[ASN][1000 genomes]
rs35212550	0.86[ASN][1000 genomes]
rs4354871	0.93[ASN][1000 genomes]
rs4480739	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775793	0.86[CEU][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap]
rs4775797	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs7177541	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8026097	0.85[ASN][1000 genomes]
rs935001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351200-49354000	Weak transcription	Lung	lung
2	chr15:49351400-49354400	Enhancers	HUVEC	blood vessel
3	chr15:49351400-49358800	Enhancers	Placenta	Placenta
4	chr15:49352200-49353600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr15:49352200-49353600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:49352200-49353800	Enhancers	Fetal Thymus	thymus
7	chr15:49352200-49353800	Enhancers	Osteobl	bone
8	chr15:49352200-49354400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr15:49352200-49355200	Enhancers	Primary T cells from cord blood	blood
10	chr15:49352200-49356200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:49352400-49353600	Enhancers	Dnd41	blood
13	chr15:49352400-49353600	Enhancers	HSMM	muscle
14	chr15:49352400-49353600	Enhancers	NHLF	lung
15	chr15:49352400-49353800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:49352400-49353800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:49352400-49353800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr15:49352400-49354200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr15:49352400-49354800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:49352400-49356800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr15:49352600-49354000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:49352600-49354200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:49352800-49353400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:49353000-49353600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:49353000-49353600	Enhancers	NH-A	brain
26	chr15:49353000-49353800	Enhancers	Hela-S3	cervix
27	chr15:49353000-49354400	Enhancers	Thymus	Thymus
28	chr15:49353200-49356000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:49353200-49357400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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