Variant report

Variant	rs935001
Chromosome Location	chr15:49354382-49354383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49349932..49352562-chr15:49353370..49355635,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11070677	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs11070679	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11070681	0.83[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11632520	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11635777	1.00[ASW][hapmap];0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12101599	0.86[CHD][hapmap]
rs12441272	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12442006	0.86[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.80[TSI][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12906122	0.82[ASW][hapmap]
rs12915955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2305195	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs34825252	0.86[ASN][1000 genomes]
rs35212550	0.86[ASN][1000 genomes]
rs4354871	0.93[ASN][1000 genomes]
rs4480739	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775793	0.91[ASW][hapmap];0.86[CEU][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.94[YRI][hapmap]
rs4775797	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs7177541	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs725815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026097	0.85[ASN][1000 genomes]
rs935002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351400-49354400	Enhancers	HUVEC	blood vessel
2	chr15:49351400-49358800	Enhancers	Placenta	Placenta
3	chr15:49352200-49354400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:49352200-49355200	Enhancers	Primary T cells from cord blood	blood
5	chr15:49352200-49356200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:49352400-49354800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:49352400-49356800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr15:49353000-49354400	Enhancers	Thymus	Thymus
10	chr15:49353200-49356000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:49353200-49357400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr15:49353400-49355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:49353600-49355600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:49353600-49355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:49353600-49355800	Weak transcription	NHLF	lung
16	chr15:49353800-49355800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:49353800-49356000	Weak transcription	Hela-S3	cervix
18	chr15:49353800-49356200	Weak transcription	Fetal Thymus	thymus
19	chr15:49353800-49356600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:49354000-49355200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr15:49354000-49355800	Enhancers	Lung	lung
22	chr15:49354000-49358600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:49354200-49355200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:49354200-49355400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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