Variant report

Variant	rs4354871
Chromosome Location	chr15:49337382-49337383
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr15:49336274-49339327	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:49336928-49337422	MCF10A-Er-Src	breast:	n/a	n/a
3	ZNF384	chr15:49337223-49337600	K562	blood:	n/a	n/a
4	ZNF384	chr15:49337319-49338042	GM12878	blood:	n/a	n/a
5	MAZ	chr15:49337232-49339570	IMR90	lung:	n/a	n/a
6	CHD1	chr15:49336525-49339502	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RN7SL577P	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11070677	0.84[EUR][1000 genomes]
rs11070679	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11635777	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12441272	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12442006	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12904439	0.84[EUR][1000 genomes]
rs12915955	0.93[ASN][1000 genomes]
rs12916364	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2305195	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34825252	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35212550	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4480739	0.94[ASN][1000 genomes]
rs4775793	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4775797	0.84[EUR][1000 genomes]
rs7177541	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs725815	0.93[ASN][1000 genomes]
rs8026097	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs935001	0.93[ASN][1000 genomes]
rs935002	0.93[ASN][1000 genomes]
rs935004	0.93[ASN][1000 genomes]
rs9920868	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:49321400-49338000	Weak transcription	Spleen	Spleen
3	chr15:49328400-49338000	Weak transcription	Esophagus	oesophagus
4	chr15:49328600-49337400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:49328600-49337400	Weak transcription	Colonic Mucosa	Colon
6	chr15:49328600-49337400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:49328600-49338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:49328600-49338000	Weak transcription	Gastric	stomach
9	chr15:49329200-49337400	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:49329200-49337400	Weak transcription	Fetal Thymus	thymus
11	chr15:49334800-49337800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:49335200-49337400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr15:49335200-49337400	Weak transcription	Left Ventricle	heart
14	chr15:49335200-49337600	Weak transcription	Lung	lung
15	chr15:49335200-49337600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr15:49335200-49337800	Weak transcription	Pancreas	Pancrea
17	chr15:49335200-49338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:49335400-49337400	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr15:49335800-49337400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr15:49335800-49337600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:49335800-49339200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:49335800-49339200	Active TSS	NHLF	lung
23	chr15:49336200-49337600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr15:49336200-49338000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:49336200-49338200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr15:49336200-49339200	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr15:49336200-49339200	Active TSS	HMEC	breast
28	chr15:49336200-49339400	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr15:49336200-49339800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:49336400-49337800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr15:49336400-49337800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr15:49336400-49337800	Flanking Active TSS	Dnd41	blood
33	chr15:49336400-49338200	Active TSS	Right Atrium	heart
34	chr15:49336400-49338600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:49336400-49338800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:49336400-49338800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr15:49336400-49338800	Active TSS	K562	blood
38	chr15:49336400-49339000	Active TSS	Stomach Smooth Muscle	stomach
39	chr15:49336400-49339000	Active TSS	HSMMtube	muscle
40	chr15:49336400-49339200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:49336400-49339200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr15:49336400-49339200	Active TSS	Brain Anterior Caudate	brain
43	chr15:49336400-49339200	Active TSS	Placenta	Placenta
44	chr15:49336400-49339400	Active TSS	Brain Angular Gyrus	brain
45	chr15:49336600-49337400	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr15:49336600-49337400	Enhancers	Primary B cells from peripheral blood	blood
47	chr15:49336600-49337400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:49336600-49337400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr15:49336600-49337600	Flanking Active TSS	Rectal Smooth Muscle	rectum
50	chr15:49336600-49337800	Enhancers	Small Intestine	intestine

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