Variant report

Variant	rs935004
Chromosome Location	chr15:49355137-49355138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49148960..49151118-chr15:49354539..49356746,2	K562	blood:
2	chr15:49351455..49354090-chr15:49354572..49357346,2	MCF-7	breast:
3	chr15:49349932..49352562-chr15:49353370..49355635,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070679	0.90[ASN][1000 genomes]
rs11070681	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11632520	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11635777	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12441272	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12442006	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12915955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2305195	0.86[ASN][1000 genomes]
rs34825252	0.86[ASN][1000 genomes]
rs35212550	0.86[ASN][1000 genomes]
rs4354871	0.93[ASN][1000 genomes]
rs4480739	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177541	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs725815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026097	0.85[ASN][1000 genomes]
rs935001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49351400-49358800	Enhancers	Placenta	Placenta
2	chr15:49352200-49355200	Enhancers	Primary T cells from cord blood	blood
3	chr15:49352200-49356200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr15:49352200-49358600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:49352400-49356800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:49353200-49356000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:49353200-49357400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr15:49353400-49355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:49353600-49355600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:49353600-49355600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr15:49353600-49355800	Weak transcription	NHLF	lung
12	chr15:49353800-49355800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:49353800-49356000	Weak transcription	Hela-S3	cervix
14	chr15:49353800-49356200	Weak transcription	Fetal Thymus	thymus
15	chr15:49353800-49356600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:49354000-49355200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr15:49354000-49355800	Enhancers	Lung	lung
18	chr15:49354000-49358600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:49354200-49355200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:49354200-49355400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr15:49354400-49355600	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr15:49354800-49355200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:49354800-49355200	Active TSS	Brain Hippocampus Middle	brain
24	chr15:49354800-49355200	Enhancers	Brain Substantia Nigra	brain
25	chr15:49354800-49355600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:49354800-49356200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:49355000-49355400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:49355000-49355400	Flanking Bivalent TSS/Enh	HepG2	liver

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